View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15803_low_3 (Length: 464)
Name: NF15803_low_3
Description: NF15803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15803_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Original strand, 42944499 - 42944937
Alignment:
| Q |
10 |
ataatactcaattgtgtggttgttcgattttgatataaaaatgcatatatagtatgaattgtaaattgtttatgccttatatctgagtgcattcaaacgt |
109 |
Q |
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| T |
42944499 |
ataatactcaattgtgtggttgttcgattttgatataaaaatgtatatataatatgaattgtaaattgtttatgccttatatctgagtgcattcaaacgt |
42944598 |
T |
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| Q |
110 |
actcttttgcaagttgcaccttcttcccaatctcattaggcatcttctcctacacccccattagatagcatccaatggattttaatgcacacattataga |
209 |
Q |
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| T |
42944599 |
actcttttgcaagttgcaccttcttcccaatctcattaggcatctcctcctacacccccattagatagcatccaatggattttaatgcacacattataga |
42944698 |
T |
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| Q |
210 |
tatggtaaagagtagtgctatttgcggcgagagatattttcccgaatgattcacgaaataaccctcaaccaattaaatcttgggaatggccggaataaac |
309 |
Q |
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| T |
42944699 |
tatggtaaagagtattgctatttgtggcgagagatattttctcgaatgattcacgaaataaccctcaaccaattaaatcttgggaatggccggaataaac |
42944798 |
T |
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| Q |
310 |
gcagacagtggggttcaaatttttaacatttcaaaagcgttgttggaatcaaagttcatgatacagtagtaaaatggattattcgtgatgttcaacatta |
409 |
Q |
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| T |
42944799 |
gcggacagtggggttcaaatttttaacatttcaaaagcgttgttggaatcaaagttcatgatacagttgtaaactgggttattcgtgatgttcaacatta |
42944898 |
T |
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| Q |
410 |
ccgtattgtaaaagagtagtgctatttacggctagagat |
448 |
Q |
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| T |
42944899 |
ccgtattgtaaaagagtagtgctatttacggctagagat |
42944937 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 46384989 - 46384949
Alignment:
| Q |
274 |
tcaaccaattaaatcttgggaatggccggaataaacgcaga |
314 |
Q |
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| T |
46384989 |
tcaaccaattaaaacttgggaatggccggaataaatgcaga |
46384949 |
T |
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