View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15803_low_4 (Length: 391)
Name: NF15803_low_4
Description: NF15803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15803_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 35632518 - 35632876
Alignment:
| Q |
18 |
catataggtaacatttcttctgttggcagcttcagctagagcagaattcagaagccttttcgcaactccctgcaaaatcaatcatagcataacctctagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35632518 |
catataggtaacatttcttctgttggcagcttcagctagagcagaattcagaagcctttttgcaactccctgcaaaatcaatcatagcataacctctagt |
35632617 |
T |
|
| Q |
118 |
gaagactcaaattcgtcatcgatnnnnnnncacagaattattttcattttcttaagactaaacaagcctgtgttttttcacaatacaaaaggaaaaacca |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35632618 |
aaagactcaaattcgtcatcgataaaaaaacacagaattattttcattttcttaagactaaacaagcccgtgttttttcacaatacaaaaggaaaaacca |
35632717 |
T |
|
| Q |
218 |
agaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35632718 |
agaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtcc |
35632817 |
T |
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| Q |
318 |
aacagacgcaaatataagaaacttatcattctctgttaaaactctagtaaacatctctg |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35632818 |
aacagacgcaaatataagaaacttatcattctctgttaaaactctagtaaacatctctg |
35632876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 205 - 376
Target Start/End: Original strand, 35629549 - 35629722
Alignment:
| Q |
205 |
aaaggaaaaaccaagaaaagaacaagtcatagatatggatatataca--tacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaa |
302 |
Q |
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| T |
35629549 |
aaaggaaaaaccaagaaaagaaaaagtcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaa |
35629648 |
T |
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| Q |
303 |
gaactcccaaagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctagtaaacatctctg |
376 |
Q |
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||| |||||||||||| |||| ||||||||||||||||| ||| | | |||||||||||||||| |||||||| |
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| T |
35629649 |
gaaatcccaaagtccatcagaagcaaatataagaaacttgtcactatatgttaaaactctagtacgcatctctg |
35629722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 205 - 364
Target Start/End: Original strand, 35635967 - 35636126
Alignment:
| Q |
205 |
aaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaaga |
304 |
Q |
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|||||||||| |||||||||| |||||||||| || |||||| ||||| |||||||| ||| ||||||||||||||| ||||||| ||||||||||||| |
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| T |
35635967 |
aaaggaaaaataaagaaaagaaaaagtcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaaga |
35636066 |
T |
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| Q |
305 |
actcccaaagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctag |
364 |
Q |
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| |||||||||||| |||| |||||||| ||||||||||| |||||||||||| |||||| |
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| T |
35636067 |
aatcccaaagtccatcagaagcaaatatcagaaacttatcgttctctgttaaatctctag |
35636126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 239 - 358
Target Start/End: Complemental strand, 10338560 - 10338441
Alignment:
| Q |
239 |
atggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaa |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
10338560 |
atggatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaa |
10338461 |
T |
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| Q |
339 |
cttatcattctctgttaaaa |
358 |
Q |
| |
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||||| | |||||||||||| |
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| T |
10338460 |
cttattactctctgttaaaa |
10338441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 155 - 376
Target Start/End: Complemental strand, 10299340 - 10299123
Alignment:
| Q |
155 |
ttattttcattttcttaagactaaacaagcct--gtgttttttcacaatacaaaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacat |
252 |
Q |
| |
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||||||||||||||| ||| ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||||| |||||||| |||||| |
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| T |
10299340 |
ttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatat------atacat |
10299247 |
T |
|
| Q |
253 |
acatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaacttatcattctctg |
352 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||| | |||||||||||| |||||||||||| |||| |||||||||| |||||||||||| |||| |
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| T |
10299246 |
acatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctg |
10299147 |
T |
|
| Q |
353 |
ttaaaactctagtaaacatctctg |
376 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
10299146 |
ttaaaactctagtatgcatctctg |
10299123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 155 - 376
Target Start/End: Complemental strand, 10319772 - 10319555
Alignment:
| Q |
155 |
ttattttcattttcttaagactaaacaagcct--gtgttttttcacaatacaaaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacat |
252 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||||| |||||||| |||||| |
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| T |
10319772 |
ttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatat------atacat |
10319679 |
T |
|
| Q |
253 |
acatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaacttatcattctctg |
352 |
Q |
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|||||||| ||||||||||||||||||||||| |||| | |||||||||||| |||||||||||| |||| |||||||||| ||||| |||||| |||| |
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| T |
10319678 |
acatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactgatcattatctg |
10319579 |
T |
|
| Q |
353 |
ttaaaactctagtaaacatctctg |
376 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
10319578 |
ttaaaactctagtatgcatctctg |
10319555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 155 - 376
Target Start/End: Complemental strand, 10336888 - 10336671
Alignment:
| Q |
155 |
ttattttcattttcttaagactaaacaagcct--gtgttttttcacaatacaaaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacat |
252 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||||| |||||||| |||||| |
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| T |
10336888 |
ttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatat------atacat |
10336795 |
T |
|
| Q |
253 |
acatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaacttatcattctctg |
352 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||| | |||||||||||| |||||||||||| |||| |||||||||| ||||| |||||| |||| |
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| T |
10336794 |
acatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactgatcattatctg |
10336695 |
T |
|
| Q |
353 |
ttaaaactctagtaaacatctctg |
376 |
Q |
| |
|
|||||||||||||| |||||||| |
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| T |
10336694 |
ttaaaactctagtatgcatctctg |
10336671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 10319929 - 10319853
Alignment:
| Q |
20 |
tataggtaacatttcttctgttggcagcttcagctagagcagaattcagaagccttttcgcaactccctgcaaaatc |
96 |
Q |
| |
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|||||||||| || ||||| || |||||| | |||||||| | | |||||||||||||||||| ||||||||||||| |
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| T |
10319929 |
tataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatc |
10319853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 10337045 - 10336969
Alignment:
| Q |
20 |
tataggtaacatttcttctgttggcagcttcagctagagcagaattcagaagccttttcgcaactccctgcaaaatc |
96 |
Q |
| |
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|||||||||| || ||||| || |||||| | |||||||| | | |||||||||||||||||| ||||||||||||| |
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| T |
10337045 |
tataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatc |
10336969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 10299497 - 10299421
Alignment:
| Q |
20 |
tataggtaacatttcttctgttggcagcttcagctagagcagaattcagaagccttttcgcaactccctgcaaaatc |
96 |
Q |
| |
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|||||||||| || ||||| || |||||| | |||||||| | | ||||||||||||| |||| ||||||||||||| |
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| T |
10299497 |
tataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagcctttttgcaattccctgcaaaatc |
10299421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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