View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15804_high_1 (Length: 633)
Name: NF15804_high_1
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 10 - 617
Target Start/End: Complemental strand, 29243684 - 29243077
Alignment:
| Q |
10 |
agcaaaggaggggtataaatatagattgaagtccgggtgagcgaaatatactaattcaatgaactatatgagtaaaatgaaccacactgaactataagag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243684 |
agcaaaggaggggtataaatatagattgaagtccgggtgagcgaaatatactaattcaatgaactatatgagtaaaatgaaccacactgaactataagag |
29243585 |
T |
|
| Q |
110 |
accaaaccaattaaatggttcatgaactgaaccataaattttcaaaagtcaattaccaaactttattaagagaactggtttataatctttaaccaaaatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243584 |
accaaaccaattaaatggttcatgaactgaaccataaattttcaaaagtcaattaccaaactttattaagagaactggtttataatctttaaccaaaatc |
29243485 |
T |
|
| Q |
210 |
atctttttactcaaactttataaaagaacgttaaaatataaatcagcttccaaatttttgaaaaacaataatacaaataacctaaaattacttcttcaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243484 |
atctttttactcaaactttataaaagaacgttaaaatataaatcagcttccaaatttttgaaaaacaataatacaaataacctaaaattacttcttcaac |
29243385 |
T |
|
| Q |
310 |
gcgagtgaaccctatacccaagtttcttcgactcattgactgaaatttagcccccaaatagatttcatgttgtctcaccatctctgacgatataggcctc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243384 |
gcgagtgaaccctatacccaagtttcttcgactcattgactgaaatttagcccccaaatagatttcatgttgtctcaccatctctgacgatataggcctc |
29243285 |
T |
|
| Q |
410 |
tcttatggctgctcttctctttgtgcgatcatgcatgaccattctttcttttgatccagtctccctgcacccagactttggcaaccttcgttcattaagt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243284 |
tcttatggctgctcttctctttgtgcgatcatgcatgaccattctttcttttgatccagtctccctgcacccagactttggcaaccttcgttcattaagt |
29243185 |
T |
|
| Q |
510 |
ttattgtgttggtctccaaccccttcattcgaggtagcttcttgttcttcatcccattcaatatggtttcagttctttcatgcttttctttcggattaat |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243184 |
ttattgtgttggtctccaaccccttcattcgaggtagcttcttgttcttcatcccattcaatatggtttcagttctttcatgcttttctttcggattaat |
29243085 |
T |
|
| Q |
610 |
tttgtttt |
617 |
Q |
| |
|
|||||||| |
|
|
| T |
29243084 |
tttgtttt |
29243077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 51554684 - 51554746
Alignment:
| Q |
82 |
taaaatgaaccacactgaactataagaga-ccaaaccaattaaatggttcatgaactgaacca |
143 |
Q |
| |
|
|||| ||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
51554684 |
taaattgaaccacactgaaccataaaagaaccaaatatattaaatggttcatgaactgaacca |
51554746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University