View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_high_10 (Length: 450)
Name: NF15804_high_10
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Original strand, 16421124 - 16421548
Alignment:
| Q |
14 |
tatatattattaaagcaatagcaaacctgcaggttttccctaatacaatcctttgtaactcttttaatttgtcctgcaaattcaacggcaggaaaaatct |
113 |
Q |
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| T |
16421124 |
tatatattattaaagcaatagcaaacctgcaggttttccctaatacaatcctttgtaactctttcaatttgtactgcaaattcagcggcaggaaaaatct |
16421223 |
T |
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| Q |
114 |
gcattatgaaattttatgcagcatttaccatatttccctctattttgaaatgttgcatgttccattcaattggcaccatgttggacaaatgaaattagaa |
213 |
Q |
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| T |
16421224 |
gcattatgaaattttatgcagcatttaccatatttccctctattttgaaatgttgcatgttccattcaattagcaccatgttggacaaatgaaattagaa |
16421323 |
T |
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| Q |
214 |
gtctgatgtggcacgttaattaatattaagggtcatgatgaccttcccatgtgaatccatttcttctatataagttgtcataggaaagaggactcaacta |
313 |
Q |
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| T |
16421324 |
gtttggtgtggcacgttaattaatattaaggatcatgatgaccttcccatgtgaatccatttcttctatataggttgtcataggaaagacgactcaacta |
16421423 |
T |
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| Q |
314 |
cactatttcatttactcatatcaaaagctcttagtagaaccatcacaccttcaagtgaggtactaatggcgcgagtggagaaattcaacatgtattccaa |
413 |
Q |
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| T |
16421424 |
caccatttcatttactcagatcaaaagctcttagtagaaccatcacaccttcaagtgaggtattaatggcgcaagtggagaaattcaacatgtattccaa |
16421523 |
T |
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| Q |
414 |
tgacagttcttatgcttctagattc |
438 |
Q |
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| T |
16421524 |
tgacaattcttatgcttctagattc |
16421548 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 10423575 - 10423514
Alignment:
| Q |
36 |
aaacctgcaggttttccctaatacaatcctttgtaactcttttaatttgtcctgcaaattca |
97 |
Q |
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| T |
10423575 |
aaacctgcaggtttgccctaattctatcctttgcaactcttccaatttgtactgcaacttca |
10423514 |
T |
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