View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_high_31 (Length: 236)
Name: NF15804_high_31
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 39521443 - 39521657
Alignment:
| Q |
1 |
taaaccgccattgtaaggaaataagcctcgagcagtagaattggtgtaattgaaacgtgagattaaatcggggattaaatgaacagggagcataaagagt |
100 |
Q |
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|||||||||| | |||| | |||||| ||| |||||||| | ||||||||||||||| | | |||||||||||||||||| |||||||||||||||| |
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| T |
39521443 |
taaaccgccactataagtagttaagccccgaccagtagaaccgatgtaattgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagt |
39521542 |
T |
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| Q |
101 |
tctattgcattaacaaatgcaaatgatgatttttgaggtatgaaagtgattttgaatctttttctgatgattttaacgtaatactcttttactaaaggag |
200 |
Q |
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| T |
39521543 |
tcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggag |
39521642 |
T |
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| Q |
201 |
agttggtggtgtttt |
215 |
Q |
| |
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||||||||||||||| |
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| T |
39521643 |
agttggtggtgtttt |
39521657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 39525007 - 39525155
Alignment:
| Q |
68 |
tcggggattaaatgaacagggagcataaagagttctattgcattaacaaatgcaaatgatgatttttgaggtatgaaagtgattttgaatctttttctga |
167 |
Q |
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| T |
39525007 |
tcggggattaaatgaacagggagcataaagagttctattgcattagcaaaggcaaatgatgctttttgaggtgtgaacgtgattttgaatttttttctga |
39525106 |
T |
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| Q |
168 |
tgattttaacgtaatactcttttactaaaggagagttggtggtgttttt |
216 |
Q |
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| T |
39525107 |
tgattttaaggtaatactcttttactaaaggagagttggtggtgttttt |
39525155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 39511262 - 39511411
Alignment:
| Q |
66 |
aatcggggattaaatgaacagggagcataaagagttctattgcattaacaaatgcaaatgatgatttttgaggtatgaaagtgattttgaatctttttct |
165 |
Q |
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|||| |||||||||||||| ||||||| ||||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39511262 |
aatcagggattaaatgaacggggagcacaaagagttctattgcgttaacaaatgcgagtgatgatttttgaggtgtgaaagtgattttgaatctttttct |
39511361 |
T |
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| Q |
166 |
gatgattttaacgtaatactcttttactaaaggagagttggtggtgtttt |
215 |
Q |
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| T |
39511362 |
gatgatttgaacgtagtattcttttactaaaggagagttggtggtgtttt |
39511411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 39576153 - 39576302
Alignment:
| Q |
66 |
aatcggggattaaatgaacagggagcataaagagttctattgcattaacaaatgcaaatgatgatttttgaggtatgaaagtgattttgaatctttttct |
165 |
Q |
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|||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
39576153 |
aatcagggattaaatgaaccggaagcataaagagttctattgcattaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatctttttct |
39576252 |
T |
|
| Q |
166 |
gatgattttaacgtaatactcttttactaaaggagagttggtggtgtttt |
215 |
Q |
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| T |
39576253 |
aatgattttaacgtaatactcttttactaaagcagatttggtggtgtttt |
39576302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 39544280 - 39544450
Alignment:
| Q |
45 |
tgtaattgaaacgtgagattaaatcggggattaaatgaacagggagcataaagagttctattgcattaacaaatgcaaatgatgatttttgaggtatgaa |
144 |
Q |
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||||||||||||| | ||| ||| ||| |||||||||| |||||| ||||||||||| | |||||||| ||| |||||||| ||| |||||||| |||| |
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| T |
39544280 |
tgtaattgaaacgagctattgaattgggtattaaatgaagagggagaataaagagttcaaatgcattaaaaaacgcaaatgaagatgtttgaggtgtgaa |
39544379 |
T |
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| Q |
145 |
agtgattttgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgtttt |
215 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39544380 |
agtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaagaagagttggtggtgtttt |
39544450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 39580628 - 39580816
Alignment:
| Q |
1 |
taaaccgccattgtaaggaaataagcctcgagcagtagaattggtgtaattgaaacgtgagattaaatcggggattaaatgaacagggagcataaagagt |
100 |
Q |
| |
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|||||||||| |||||| | |||||||| || |||||||||| ||||||||||| ||| || | | |||||||| |||||| ||||| ||||||||| |
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| T |
39580628 |
taaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaatgagtggggagtataaagagt |
39580727 |
T |
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| Q |
101 |
tctattgcattaacaaatgcaaatgatgatttttgaggtatgaaagtgattttgaatctttttctgatgattttaacgtaatactcttt |
189 |
Q |
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|| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| | | ||||||||| | |||| ||||| |
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| T |
39580728 |
tccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattcttt |
39580816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 3331696 - 3331625
Alignment:
| Q |
148 |
gattttgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttggtggtgtttttagc |
219 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331696 |
gattgtgaatctttttatgatgattttaacgtaatactcttttactaaaggagagttggtggtgtttttagc |
3331625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 3331316 - 3331271
Alignment:
| Q |
103 |
tattgcattaacaaatgcaaatgatgatttttgaggtatgaaagtg |
148 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
3331316 |
tattgcattaacaaatgcaaatgatgatgtttgaggtgtgaaagtg |
3331271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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