View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_high_7 (Length: 526)
Name: NF15804_high_7
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 36 - 293
Target Start/End: Complemental strand, 1288275 - 1288037
Alignment:
| Q |
36 |
cactaatattgtgtgtataatctacctgatatgggacatagtaatttttcaattcacacaaacacacttggtgttcgaacagagccatctgtccatgacc |
135 |
Q |
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| T |
1288275 |
cactaatattgtgtgtataatctaccggatatgggacataataatttttcaattcacacaaacacacttggtgttccaac-------------------c |
1288195 |
T |
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| Q |
136 |
gtcgttctatccaatctctgctcaacttctctatctgcccattttctcctccaccacgtataaggataaccctccataacgatgttaatagggttgcatc |
235 |
Q |
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| T |
1288194 |
gtcgttctatccaatctctgctcaacttctctatctgcccattttctcctccaccacgtataaggataaccctccataacgatgttaatagggttgcatc |
1288095 |
T |
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| Q |
236 |
atcaactggctcccagaataattgattagttggaatgaattccaaacgatatataaat |
293 |
Q |
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| T |
1288094 |
atcaactggctcccagaatcattgattagttggaatgaattccaaacgatatataaat |
1288037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 370 - 510
Target Start/End: Complemental strand, 1288034 - 1287895
Alignment:
| Q |
370 |
agtagtattgtgatgtatcaagtgtgggaagannnnnnngttacaggcaagaggcatacaatttgcttaactgagtttagaaatttgtttgcttaactga |
469 |
Q |
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| T |
1288034 |
agtagtattatgatgtatcaagtgtgggaagatttttt-gttacaggcaagaggcatacaatttgcttaactgagtttagagatttgtttgcttaactga |
1287936 |
T |
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| Q |
470 |
gttcattctctaaaatggactgagcacgatcgagtactacg |
510 |
Q |
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| T |
1287935 |
gttcattctctaaaatggactgagcacgatcgagtactacg |
1287895 |
T |
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