View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_10 (Length: 473)
Name: NF15804_low_10
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 118 - 458
Target Start/End: Original strand, 28894972 - 28895303
Alignment:
| Q |
118 |
ctcgaagttagtgaaaatcttgagctgagagagtaatgtagttaaatagtgaaattgattttgattatataaaaataaaggcataaaatgaatagcatgc |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
28894972 |
ctcgaagttagtgaaaatcctgagctgagagagtaatgtagttaaatagtgaaattgattttgattatataaaaataaa--------atgaaaagcatgc |
28895063 |
T |
|
| Q |
218 |
aatgaagttagtacctaaaatcacagattctcatgtcaccaccatctttgcaaataaagcaaaaactttcagcaatctcttccttttttcttttgttgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28895064 |
aatgaagttagtacctaaaatcacagattctcatgtcaccaccatctttgcaaataaagcaaaaactttcagcaatctcttccttttttcttttgttgtt |
28895163 |
T |
|
| Q |
318 |
ctttctccccatttttgctcactctgaacaaaagaacagaaaatatgaattatgattttggttcagaatgaacgaaacaagcaaaatcttgagctaagaa |
417 |
Q |
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||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28895164 |
ctttctccccatttttgctcactctgaacaaaatatcag-aaatatgaattatgattttggttcagaatgaacgaaacaagcaaaatcttcagctaagaa |
28895262 |
T |
|
| Q |
418 |
actacattattattattatggtaaaatttgatgaagaaaat |
458 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
28895263 |
actacattattattattatggtaaaagttgatgaagaaaat |
28895303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 28905461 - 28905566
Alignment:
| Q |
229 |
tacctaaaatcacagattctcatgtcaccaccatctttgcaaataaagcaaaaactttcagcaatctcttccttttttcttttgttgttctttctcccca |
328 |
Q |
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|||| ||||||||||| |||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
28905461 |
tacccaaaatcacagactctcatttcaccaccatctttgcaaacaaagcaataatcttcagcaatctcttccttttttcttttgttgttctttttcacca |
28905560 |
T |
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| Q |
329 |
tttttg |
334 |
Q |
| |
|
|||||| |
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|
| T |
28905561 |
tttttg |
28905566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 336
Target Start/End: Original strand, 28918466 - 28918573
Alignment:
| Q |
229 |
tacctaaaatcacagattctcatgtcaccaccatctttgcaaataaagcaaaaactttcagcaatctcttccttttttcttttgttgttctttctcccca |
328 |
Q |
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|||||| ||||||||| ||||| | |||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||| |||||| || ||| |
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| T |
28918466 |
tacctagaatcacagaccctcatttgaccaccatctttgcaagaaaagcaacaaccttcagcaatctcttccttctttcttttgttattctttttcacca |
28918565 |
T |
|
| Q |
329 |
tttttgct |
336 |
Q |
| |
|
|||||||| |
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|
| T |
28918566 |
tttttgct |
28918573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 334
Target Start/End: Original strand, 28938790 - 28938906
Alignment:
| Q |
218 |
aatgaagttagtacctaaaatcacagattctcatgtcaccaccatctttgcaaataaagcaaaaactttcagcaatctcttccttttttcttttgttgtt |
317 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||| ||||||||||||||||| | ||||||| || ||||| || ||||||||| ||||||||||||| |
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| T |
28938790 |
aatgatgttagtacctgaaatcacagactctcaattcaccaccatctttgcagaaaaagcaataatcttcagagatttcttcctttcttcttttgttgtt |
28938889 |
T |
|
| Q |
318 |
ctttctccccatttttg |
334 |
Q |
| |
|
| || |||||||||||| |
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| T |
28938890 |
ccttttccccatttttg |
28938906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 28928217 - 28928322
Alignment:
| Q |
229 |
tacctaaaatcacagattctcatgtcaccaccatctttgcaaataaagcaaaaactttcagcaatctcttccttttttcttttgttgttctttctcccca |
328 |
Q |
| |
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||||| |||||||| | ||||| ||||||||||||||||||| |||||| | |||||| ||||||||||||||||||||||| |||||| | |||| |
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| T |
28928217 |
tacctgaaatcacatactctcagttcaccaccatctttgcaaacaaagcaccattcttcagcgatctcttccttttttcttttgttattcttttttccca |
28928316 |
T |
|
| Q |
329 |
tttttg |
334 |
Q |
| |
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| |||| |
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|
| T |
28928317 |
tctttg |
28928322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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