View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_11 (Length: 459)
Name: NF15804_low_11
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 52918931 - 52918525
Alignment:
| Q |
12 |
atgaagatggcaagaagatttggacattgaggctgaaagctactcttgatagatcaaagaggcttactgaggaatataccgaagaacttcttaagatatt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52918931 |
atgaagatggcaagaagatttggacattgaggctgaaagctactcttgatagatcaaagagtcttactgaggaatataccgaagaacttcttaagatatt |
52918832 |
T |
|
| Q |
112 |
tcctcaaaaagtggaggttaaatagtaatttattgttcagataaagcctggtatttattgtgcagtgcaaaattttactaaaccaatataatataaactc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52918831 |
tcctcaaaaagtggaggttaaatagtaatttattgttcagataaagcctggtatttattgtgcagtgcaaaattttactaaaccaatataatataaactc |
52918732 |
T |
|
| Q |
212 |
ataaagtgaagcccaagtacaaccaaaactagggaataattgtgatttgcggcctgctacggtcttttaattttacaattgaccttttaatcaaaataag |
311 |
Q |
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| T |
52918731 |
acaaagtgaagcccaagtacaaccaaaactagggaataattgtgatttgcggcctgctacggtcttttaattttacaattgaccttttaatcaaaataag |
52918632 |
T |
|
| Q |
312 |
ccagaatattgagacaagataatttcatttcaaatttgggaatcgtaattgtggtgcttctttcatttcaaacctgaacaaggtcttgtgataccaatac |
411 |
Q |
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| T |
52918631 |
ccagaatattgagacaagataatttcatttcaaatttgggaatcgtaattgtggtgcttctttcatttcaaacctgaacaaggtcttgtgataccaatag |
52918532 |
T |
|
| Q |
412 |
tgtttgg |
418 |
Q |
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| T |
52918531 |
tgtttgg |
52918525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 35230664 - 35230256
Alignment:
| Q |
12 |
atgaagatggcaagaagatttggacattgaggctgaaagctactcttgatagatcaaagaggcttactgaggaatataccgaagaacttcttaagatatt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
35230664 |
atgaagatggcaagaagatttggacattgaggctgaaagctactcttgatagatcaaagaggcttactgaggaatatactgaagaacttcttcagatatt |
35230565 |
T |
|
| Q |
112 |
tcctcaaaaagtggaggttaaatagtaatttattgttcagataaagcctggtatttattgtgcagtgcaaaattttactaaaccaatataatataaactc |
211 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35230564 |
tcctcaaaaagtggaggttaaatagtaatctattgttcagataaagcctggtatttattgtgcagtgcaaaattttactaaaccaatataatataaactc |
35230465 |
T |
|
| Q |
212 |
ataaagtgaagcccaagtacaaccaaaactagggaataattgtgatttgcggcctgctacggtcttttaattttacaattgaccttttaatcaaaataag |
311 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35230464 |
acaaagtgaagcccaagtacaaccaaaactagggaataattgtgatttgcagcctactacagtcttttaattttacaattgaccttttaatcaaaataag |
35230365 |
T |
|
| Q |
312 |
ccagaatattgagacaagataatttcatttcaaatttgggaatcgtaattgtggtgcttctttcatttcaaacctgaacaa----ggtcttgtgatacca |
407 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |
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| T |
35230364 |
ccagaata--gagacaagataatttcatttcaaatttgggaatcgtaattgtggtgcatctttaatttcaaacctgaacaatgttggtcttgtgatacca |
35230267 |
T |
|
| Q |
408 |
atactgtttgg |
418 |
Q |
| |
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||||||||||| |
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|
| T |
35230266 |
atactgtttgg |
35230256 |
T |
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