View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_14 (Length: 436)
Name: NF15804_low_14
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 41784323 - 41784739
Alignment:
| Q |
1 |
aactaagcatacaaaatactgagctacagaatcatgtcatggaacttgagtcgttgttgaaagagaaacaaggtgtggtatctgatctggagatgaaact |
100 |
Q |
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| T |
41784323 |
aactaagcatacaaaatactgagctacagaatcatgtcatggaacttgagtcgttgttgaaagagaaacaaggtgtggtatctgatctggagatgaaact |
41784422 |
T |
|
| Q |
101 |
caacaacagcgaggaacaagcaaaatccaacattgtaatattgatggcacaagtcaatgaacttgtacttgagaccgaatctctgaggacccaaaaagat |
200 |
Q |
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| T |
41784423 |
caacaacagcgaggaacaagcaaaatccaacattgtaatattgatggcacaagtcaacgaacttgtacttgagaccgaatctctgaggacccaaaaagat |
41784522 |
T |
|
| Q |
201 |
gagatggaagaaaaaataaaatgtgatcaaaatgaagcgtctatgcaaagagatgacttgatggagaagcttaacgttatgcaacaaaagttagattcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41784523 |
gagatggaagaaaaaataaaatgtgatcaaaatgaagcgtctatgcaaagagatgacttgatggagaagcttaacgttatgcaacaaaagttagattcta |
41784622 |
T |
|
| Q |
301 |
tagagaatcataacaaagaattagaagctcagttggaaagaaaagcagaagaaatatcccagttcctaattcagatggaaaatttaaaggagaatttagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41784623 |
tagagaatcataacaaagaattagaagctcagttggaaagaaaagcagaagaaatatcccagttcctaattcagatggaaaatttaaaggagaatttagc |
41784722 |
T |
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| Q |
401 |
cgaaatgaaatcaaccg |
417 |
Q |
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| T |
41784723 |
cgaaatgaaatcaaccg |
41784739 |
T |
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