View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15804_low_16 (Length: 387)

Name: NF15804_low_16
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15804_low_16
NF15804_low_16
[»] chr4 (22 HSPs)
chr4 (15-230)||(18737665-18737880)
chr4 (21-230)||(18716989-18717201)
chr4 (22-230)||(18648537-18648742)
chr4 (228-370)||(18716802-18716944)
chr4 (228-370)||(18737475-18737620)
chr4 (228-370)||(3409347-3409490)
chr4 (265-370)||(32429070-32429175)
chr4 (280-370)||(18671152-18671242)
chr4 (265-370)||(3424150-3424254)
chr4 (265-370)||(35091178-35091282)
chr4 (271-370)||(35096291-35096389)
chr4 (228-308)||(14643544-14643625)
chr4 (228-308)||(47071715-47071796)
chr4 (228-308)||(30019656-30019735)
chr4 (228-308)||(22119031-22119112)
chr4 (228-306)||(34601843-34601922)
chr4 (331-363)||(3409510-3409542)
chr4 (331-363)||(18671100-18671132)
chr4 (331-363)||(18716750-18716782)
chr4 (331-363)||(18737423-18737455)
chr4 (331-363)||(25618209-25618241)
chr4 (331-363)||(47071661-47071693)
[»] chr8 (10 HSPs)
chr8 (228-370)||(10340716-10340859)
chr8 (265-370)||(14318452-14318556)
chr8 (265-370)||(18494014-18494118)
chr8 (265-370)||(26986826-26986930)
chr8 (265-370)||(34108494-34108598)
chr8 (265-370)||(26981712-26981816)
chr8 (265-370)||(14314748-14314852)
chr8 (228-302)||(18608450-18608525)
chr8 (267-308)||(43956689-43956730)
chr8 (331-363)||(1782085-1782117)
[»] chr3 (23 HSPs)
chr3 (265-370)||(49784808-49784913)
chr3 (265-370)||(4050071-4050175)
chr3 (265-370)||(4055205-4055309)
chr3 (265-370)||(5481325-5481429)
chr3 (265-370)||(6852789-6852893)
chr3 (265-370)||(6857892-6857996)
chr3 (265-370)||(10591132-10591236)
chr3 (265-370)||(10672775-10672879)
chr3 (265-370)||(10677888-10677992)
chr3 (271-370)||(5457854-5457952)
chr3 (265-370)||(1302081-1302185)
chr3 (265-370)||(8465013-8465117)
chr3 (265-370)||(10584695-10584799)
chr3 (265-370)||(31081344-31081448)
chr3 (271-370)||(8458575-8458673)
chr3 (265-370)||(31076237-31076343)
chr3 (265-370)||(33702436-33702540)
chr3 (265-356)||(20891425-20891516)
chr3 (228-355)||(18023932-18024061)
chr3 (229-308)||(29827786-29827866)
chr3 (271-356)||(3187288-3187373)
chr3 (271-322)||(269487-269538)
chr3 (228-332)||(18023340-18023445)
[»] chr1 (16 HSPs)
chr1 (265-370)||(43359064-43359169)
chr1 (228-356)||(17414321-17414450)
chr1 (265-370)||(28574560-28574664)
chr1 (265-370)||(28598572-28598676)
chr1 (271-370)||(3468331-3468429)
chr1 (265-360)||(3701301-3701396)
chr1 (228-308)||(19311137-19311218)
chr1 (228-314)||(1188129-1188216)
chr1 (228-362)||(3696129-3696264)
chr1 (228-308)||(13654633-13654714)
chr1 (228-308)||(35653052-35653133)
chr1 (228-307)||(10186014-10186094)
chr1 (228-307)||(10186321-10186401)
chr1 (228-306)||(44523890-44523968)
chr1 (228-291)||(1188307-1188371)
chr1 (331-363)||(43359013-43359045)
[»] chr7 (9 HSPs)
chr7 (265-370)||(26056397-26056501)
chr7 (265-370)||(26065756-26065860)
chr7 (265-370)||(12851939-12852043)
chr7 (265-370)||(12857052-12857156)
chr7 (265-370)||(14610592-14610696)
chr7 (265-370)||(26051284-26051388)
chr7 (265-370)||(26060643-26060747)
chr7 (228-304)||(2248871-2248948)
chr7 (228-307)||(37459721-37459801)
[»] chr6 (4 HSPs)
chr6 (265-370)||(21276036-21276140)
chr6 (228-308)||(12909578-12909659)
chr6 (228-308)||(12934685-12934766)
chr6 (228-306)||(21936426-21936505)
[»] chr5 (10 HSPs)
chr5 (265-370)||(9872261-9872365)
chr5 (265-370)||(9877376-9877480)
chr5 (265-370)||(39904108-39904212)
chr5 (228-323)||(2024353-2024449)
chr5 (265-370)||(39909221-39909325)
chr5 (228-308)||(43540582-43540663)
chr5 (314-370)||(2023275-2023331)
chr5 (228-356)||(4555871-4556000)
chr5 (229-308)||(35368642-35368722)
chr5 (265-308)||(13556141-13556184)
[»] chr2 (10 HSPs)
chr2 (265-370)||(14917219-14917323)
chr2 (271-370)||(39178862-39178960)
chr2 (265-371)||(30283287-30283392)
chr2 (265-370)||(17720363-17720467)
chr2 (271-370)||(45120650-45120748)
chr2 (265-365)||(17720036-17720135)
chr2 (228-314)||(20892116-20892203)
chr2 (228-308)||(42780497-42780578)
chr2 (331-363)||(20892252-20892284)
chr2 (331-363)||(42780443-42780475)
[»] scaffold0223 (1 HSPs)
scaffold0223 (265-370)||(1856-1960)
[»] scaffold0005 (1 HSPs)
scaffold0005 (228-308)||(173667-173748)
[»] scaffold0006 (1 HSPs)
scaffold0006 (228-308)||(144394-144475)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 18737880 - 18737665
Alignment:
Q  15 cccaagtttaaattgaaatttccattttaatttatgtttataacagttactgggattattacagttataaaccacttaactagttttctgttatgatgtt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18737880 cccaagtttaaattgaaatttccattttaatttatgtttataacagttactggggttattacagttataaaccacttaactagttttctgttatgatgtt 18737781  T
Q  115 tcagatatagttgaacagcataacagaaatttgttggttagttgagtgggggataaaagcaacgatgagtatgggtctagttctcacatgtcatacaaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18737780 tcagatatagttgaacagcataacagaaatttgttggttagttgagtggggaataaaagcaacaatgagtatgggtctagttctcacatgtcatacaaaa 18737681  T
Q  215 tcttatacgatattaa 230  Q
    ||||||||||||||||    
T  18737680 tcttatacgatattaa 18737665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 18717201 - 18716989
Alignment:
Q  21 tttaaattgaaatttccattttaatttatgtttataacagttactgggattattacagttataaaccacttaactagttttctgtta---tgatgtttca 117  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  18717201 tttaaattgaaattttaattttaatttatgtttataacagttactgggattattacagttataaaccacttaactagttttctgttacaatgatgtttca 18717102  T
Q  118 gatatagttgaacagcataacagaaatttgttggttagttgagtgggggataaaagcaacgatgagtatgggtctagttctcacatgtcatacaaaatct 217  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  18717101 gatatagtttaacggcataacagaaatttgttggttagttgagtgggggataaaagcaacaatgaatatgggtctagttctcacatgtcatacaaaatct 18717002  T
Q  218 tatacgatattaa 230  Q
    |||||||||||||    
T  18717001 tatacgatattaa 18716989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 18648742 - 18648537
Alignment:
Q  22 ttaaattgaaatttccattttaatttatgtttataacagttactgggattattacagttataaaccacttaactagttttctgttatgatgtttcagata 121  Q
    ||||||| |||||||||||||||||||||||||   |||||||||||||| |||||||||  ||| |||||| |||||||||||||||||||||||||||    
T  18648742 ttaaattaaaatttccattttaatttatgttta---cagttactgggattgttacagttactaactacttaagtagttttctgttatgatgtttcagata 18648646  T
Q  122 tagttgaacagcataacagaaatttgttggttagttgagtgggggataaaagcaacgatgagtatgggtctagttctcacatgtcatacaaaatcttata 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18648645 tagttgaacagcataacagaaatttgttggttagttgagtgggggataaaagcaacaatgagtatgggtctagttctcacatgtcatacaaaatcttata 18648546  T
Q  222 cgatattaa 230  Q
    |||| ||||    
T  18648545 cgatgttaa 18648537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 228 - 370
Target Start/End: Complemental strand, 18716944 - 18716802
Alignment:
Q  228 taatggaatcagtttagaaccaaaattgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgat 327  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18716944 taatggaatcagtttagaaccaaaactgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgat 18716845  T
Q  328 agataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18716844 agataatgaaccatgacattgattcaagtgtatatggttataa 18716802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 228 - 370
Target Start/End: Complemental strand, 18737620 - 18737475
Alignment:
Q  228 taatggaatcagtttagaaccaaaattgtaactct---tcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagt 324  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18737620 taatggaatcagtttagaaccaaaattgtaactctaattcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagt 18737521  T
Q  325 gatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  18737520 gatagataatgaaccatgacattgattcaagtgtatattgttataa 18737475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 228 - 370
Target Start/End: Original strand, 3409347 - 3409490
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtga 326  Q
    ||||||||||| |||||||| |||| |||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||    
T  3409347 taatggaatcactttagaactaaaagttgttactcttgaccaagatttgtaactcttcatgagaaccattcatatacattggaacattattatttattga 3409446  T
Q  327 tagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||    
T  3409447 tagataatgaaccatgacattgattcaaatgtgtatagttataa 3409490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 32429070 - 32429175
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  32429070 accaagagttgtaactcttcatggaaatcattcatatacattggaacattattatttattgatagataatgaaccatgacaatgattcaagtgtatatgg 32429169  T
Q  365 ttataa 370  Q
    ||||||    
T  32429170 ttataa 32429175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 18671242 - 18671152
Alignment:
Q  280 tcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  18671242 tcttcatgggaaccattcatatacattggtacattattatttattgataaataatgaaccatgacattgatttaagtgtatatggttataa 18671152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 3424150 - 3424254
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||    
T  3424150 accaaaagttgtaactcttcatgagaaccat-catatacattggaacattattatttattgatagataatgaaccatgacattgattcaaatgtgtatgg 3424248  T
Q  365 ttataa 370  Q
    ||||||    
T  3424249 ttataa 3424254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 35091282 - 35091178
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  35091282 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 35091184  T
Q  365 ttataa 370  Q
    ||||||    
T  35091183 ttataa 35091178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 370
Target Start/End: Complemental strand, 35096389 - 35096291
Alignment:
Q  271 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||||||||    
T  35096389 agttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatggttataa 35096291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 14643544 - 14643625
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  14643544 taattgaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactattcatgggaatcattcatatacattgg 14643625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 47071796 - 47071715
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||||||    
T  47071796 taatggaatcactttacaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgaaaatcattcatatacattgg 47071715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 30019656 - 30019735
Alignment:
Q  228 taatggaatcagtttagaaccaaaattgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  30019656 taatggaatcactttagaatcaag-ttgtaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattgg 30019735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 22119112 - 22119031
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||||| ||  || ||||||| ||||||||    
T  22119112 taatggaatcactttagaaccaaaagttgtaactcttcatcaagagttgcaactcttcctgaaaatcattcatttacattgg 22119031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 34601843 - 34601922
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacatt 306  Q
    ||||||||||| |||||||| |||| |||||||| ||||| |  ||||||||||||||||| ||| ||||||||||||||    
T  34601843 taatggaatcattttagaactaaaagttgtaacttttcacgagaagttgtaactcttcatgagaatcattcatatacatt 34601922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 3409510 - 3409542
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  3409510 taatgaaccataacattgattcaagtgtatatg 3409542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 18671132 - 18671100
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  18671132 taatgaaccataacattgattcaagtgtatatg 18671100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 18716782 - 18716750
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  18716782 taatgaaccataacattgattcaagtgtatatg 18716750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 18737455 - 18737423
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  18737455 taatgaaccataacattgattcaagtgtatatg 18737423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 25618209 - 25618241
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  25618209 taatgaaccataacattgattcaagtgtatatg 25618241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 47071693 - 47071661
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  47071693 taatgaaccataacattgattcaagtgtatatg 47071661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 228 - 370
Target Start/End: Original strand, 10340716 - 10340859
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtga 326  Q
    ||||||||||| ||||||||||||| |||| | |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||    
T  10340716 taatggaatcactttagaaccaaaagttgttaatcttgaccaagagttgtaactcttcatggaaaccattcatatacattggaacattattatttattga 10340815  T
Q  327 tagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  10340816 tagataatgaaccatgacattgattcaagtgtgtatggttataa 10340859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 14318452 - 14318556
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  14318452 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 14318550  T
Q  365 ttataa 370  Q
    ||||||    
T  14318551 ttataa 14318556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 18494014 - 18494118
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  18494014 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 18494112  T
Q  365 ttataa 370  Q
    ||||||    
T  18494113 ttataa 18494118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 26986826 - 26986930
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  26986826 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 26986924  T
Q  365 ttataa 370  Q
    ||||||    
T  26986925 ttataa 26986930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 34108598 - 34108494
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  34108598 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 34108500  T
Q  365 ttataa 370  Q
    ||||||    
T  34108499 ttataa 34108494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 26981712 - 26981816
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||| ||    
T  26981712 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatacgg 26981810  T
Q  365 ttataa 370  Q
    ||||||    
T  26981811 ttataa 26981816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 14314748 - 14314852
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  14314748 accaaaagttgtaactcttaatgggaaccattcgtatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 14314846  T
Q  365 ttataa 370  Q
    ||||||    
T  14314847 ttataa 14314852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 18608450 - 18608525
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatata 302  Q
    ||||||||||| |||||||| |||| |||| | |||| ||||||||||||||||||||||||||| ||||||||||    
T  18608450 taatggaatcactttagaactaaaagttgtgattcttaaccaagagttgtaactcttcatgggaatcattcatata 18608525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 43956689 - 43956730
Alignment:
Q  267 caagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    |||||||||||||||||||||| || | ||||||||||||||    
T  43956689 caagagttgtaactcttcatggaaatctttcatatacattgg 43956730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 1782117 - 1782085
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  1782117 taatgaaccataacattgattcaagtgtatatg 1782085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 49784913 - 49784808
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49784913 accaaaagttgtaactcttcatggaaatcattcatatacattggaacattattatttattgatagataatgaaccatgacattgattcaagtgtatatgg 49784814  T
Q  365 ttataa 370  Q
    ||||||    
T  49784813 ttataa 49784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 4050175 - 4050071
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  4050175 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 4050077  T
Q  365 ttataa 370  Q
    ||||||    
T  4050076 ttataa 4050071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 4055309 - 4055205
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  4055309 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 4055211  T
Q  365 ttataa 370  Q
    ||||||    
T  4055210 ttataa 4055205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 5481325 - 5481429
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  5481325 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 5481423  T
Q  365 ttataa 370  Q
    ||||||    
T  5481424 ttataa 5481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 6852789 - 6852893
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  6852789 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 6852887  T
Q  365 ttataa 370  Q
    ||||||    
T  6852888 ttataa 6852893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 6857892 - 6857996
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  6857892 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 6857990  T
Q  365 ttataa 370  Q
    ||||||    
T  6857991 ttataa 6857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 10591132 - 10591236
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  10591132 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 10591230  T
Q  365 ttataa 370  Q
    ||||||    
T  10591231 ttataa 10591236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 10672775 - 10672879
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  10672775 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 10672873  T
Q  365 ttataa 370  Q
    ||||||    
T  10672874 ttataa 10672879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 10677888 - 10677992
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  10677888 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 10677986  T
Q  365 ttataa 370  Q
    ||||||    
T  10677987 ttataa 10677992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 370
Target Start/End: Original strand, 5457854 - 5457952
Alignment:
Q  271 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||||||||    
T  5457854 agttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatggttataa 5457952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 1302081 - 1302185
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  1302081 accaaaagttgtaactcttcatgggaaccattcatatatattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 1302179  T
Q  365 ttataa 370  Q
    ||||||    
T  1302180 ttataa 1302185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 8465117 - 8465013
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  |||||||||||||||||||| |||||| |||||||    
T  8465117 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgactcaagtatatatgg 8465019  T
Q  365 ttataa 370  Q
    ||||||    
T  8465018 ttataa 8465013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 10584695 - 10584799
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||| | |||||||    
T  10584695 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaaatatatatgg 10584793  T
Q  365 ttataa 370  Q
    ||||||    
T  10584794 ttataa 10584799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 31081344 - 31081448
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  31081344 accaaaagttgtgactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 31081442  T
Q  365 ttataa 370  Q
    ||||||    
T  31081443 ttataa 31081448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 370
Target Start/End: Complemental strand, 8458673 - 8458575
Alignment:
Q  271 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  |||||||||||| |||||||||||||| |||||||||||||    
T  8458673 agttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccataacattgattcaagtatatatggttataa 8458575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 31076237 - 31076343
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtg-atagataatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||| || ||  ||||||||||||||||||||||||||| ||||||    
T  31076237 accaaaagttgtgactcttcatggaaaccattcatatacattggaacattattatttattgtattaataatgaaccatgacattgattcaagtatatatg 31076336  T
Q  364 gttataa 370  Q
    |||||||    
T  31076337 gttataa 31076343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 33702436 - 33702540
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| | ||  ||||||||||||||||||||||||||| |||| ||    
T  33702436 accaaaagttgtaactcttcatgggaaccattcatatacataggaacattattattta-ttattaataatgaaccatgacattgattcaagtatataagg 33702534  T
Q  365 ttataa 370  Q
    ||||||    
T  33702535 ttataa 33702540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 20891516 - 20891425
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagt 356  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||  | ||||||||||| |||||||||||||||||| ||||||||||||||    
T  20891516 accaaaagttgtaactcttcatgagaatcattcatatacattgaaaaattattatttactgatagataatgaaccataacattgattcaagt 20891425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 18023932 - 18024061
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagag-ttgtaactcttcatgggaaccattcatatacattggtacattattatttagtg 325  Q
    ||||||||||| |||| |||||||| ||||||||  ||||||| || |||||||||||||| |||| || ||||||||||||| ||||||||||||| ||    
T  18023932 taatggaatcactttataaccaaaagttgtaactaatcaccaaaaggttgtaactcttcataggaatcaatcatatacattggaacattattatttactg 18024031  T
Q  326 atagataatgaaccatgacattgattcaag 355  Q
    ||||||| | ||||||  ||||||||||||    
T  18024032 atagatattaaaccatagcattgattcaag 18024061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 29827866 - 29827786
Alignment:
Q  229 aatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||| |||||||| | |||||||| |||||    
T  29827866 aatggaatcactttagaatcaaaagttgtaactcttcaccaagagttgtaattctgcatgggaatctttcatatagattgg 29827786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 3187288 - 3187373
Alignment:
Q  271 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagt 356  Q
    |||||||| | || ||| ||| ||||||||| |||||| ||| ||||||||| ||||||||||||||| || ||||||||||||||    
T  3187288 agttgtaattttttatgagaatcattcatatgcattggaacaatattatttactgatagataatgaactataacattgattcaagt 3187373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 269538 - 269487
Alignment:
Q  271 agttgtaactcttcatgggaaccattcatatacattggtacattattattta 322  Q
    ||||||| ||||| |||| ||||||||||||| ||||| |||||||||||||    
T  269538 agttgtagctctttatggaaaccattcatatatattggaacattattattta 269487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 18023340 - 18023445
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtga 326  Q
    ||||||||||| |||||||   ||| |||||| |||| ||||  | ||| |||| ||||| |||| |||||||||| ||| | ||||||||||||| |||    
T  18023340 taatggaatcactttagaattgaaagttgtaagtctttaccagaaattgcaacttttcataggaatcattcatatatattagaacattattatttactga 18023439  T
Q  327 tagata 332  Q
    ||||||    
T  18023440 tagata 18023445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 43359169 - 43359064
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  43359169 accaagagttgtaactcttcatgagaatcattcatatacattggaacattattatttattgattgataatgaaccatgatattgattcaagtgtatatgg 43359070  T
Q  365 ttataa 370  Q
    ||||||    
T  43359069 ttataa 43359064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 17414321 - 17414450
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtga 326  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||  ||| |||||||||||||| | ||||||||||||| | |    
T  17414321 taatggaatcactttagaaccaaaacttgtaactcttcaccaaaagttgtaactcttcattagaatcattcatatacattagaacattattatttactaa 17414420  T
Q  327 tagataatgaaccatgacattgattcaagt 356  Q
    |||||||||||||||  |||||||||||||    
T  17414421 tagataatgaaccatagcattgattcaagt 17414450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 28574664 - 28574560
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  28574664 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 28574566  T
Q  365 ttataa 370  Q
    ||||||    
T  28574565 ttataa 28574560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 28598676 - 28598572
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  28598676 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 28598578  T
Q  365 ttataa 370  Q
    ||||||    
T  28598577 ttataa 28598572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 271 - 370
Target Start/End: Complemental strand, 3468429 - 3468331
Alignment:
Q  271 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||||||||    
T  3468429 agttgtaattcttcataggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatggttataa 3468331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 360
Target Start/End: Original strand, 3701301 - 3701396
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtat 360  Q
    ||||| ||||||||||||| || ||||||||||||||||||| | ||||||||||||| | ||||||||||||||||  |||||||||||||||||    
T  3701301 accaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataatgaaccatagcattgattcaagtgtat 3701396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 19311218 - 19311137
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19311218 taatggaatcactttataaccaaaagttgtaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattgg 19311137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 1188216 - 1188129
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacatt 314  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||||| | |||||||||||||| |||||    
T  1188216 taatggaatcactttagaaccaaaagttgtaacttttcaccaagagttgtaactattcatgggaatctttcatatacattggaacatt 1188129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 362
Target Start/End: Original strand, 3696129 - 3696264
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtga 326  Q
    ||||||||||| ||| ||| ||||| ||||||||||| | ||| ||||| |||| |||||||||| ||||||||||||||   |||||||||||||  ||    
T  3696129 taatggaatcactttggaatcaaaagttgtaactctttatcaaaagttgcaacttttcatgggaatcattcatatacattaaaacattattatttaccga 3696228  T
Q  327 tagataatgaaccatgacattgattcaagtgtatat 362  Q
    || |||||||||||| | |||||||||||| |||||    
T  3696229 taaataatgaaccataatattgattcaagtttatat 3696264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 13654714 - 13654633
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  13654714 taatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgagagtctttcatatacattgg 13654633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 35653052 - 35653133
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  35653052 taatggaatcactttggaaccaaaagttgtaactcttcaccaagagttgtaacacttcatgggaatcattcatatatattgg 35653133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 10186094 - 10186014
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattg 307  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||    
T  10186094 taatggaatcactttagaatcaaaagttgtaactcttcaccaagaattgtaactctttatgggaatctttcatatacattg 10186014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 10186321 - 10186401
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattg 307  Q
    ||||||||||| ||||||  ||||| || |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  10186321 taatggaatcactttagactcaaaagttttaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattg 10186401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 44523890 - 44523968
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacatt 306  Q
    ||||||||||| ||| ||||||||| |||||| ||||| | |||||||||||||||||||||||| ||||||||||||||    
T  44523890 taatggaatcacttt-gaaccaaaagttgtaaatcttcgctaagagttgtaactcttcatgggaatcattcatatacatt 44523968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 1188371 - 1188307
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaa 291  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||| ||||    
T  1188371 taatggaatcactttagaaccaaaaattgtaacttttcaccaagagttgtaactcgtcataggaa 1188307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 43359045 - 43359013
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  43359045 taatgaaccataacattgattcaagtgtatatg 43359013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 26056501 - 26056397
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||| |||||||    
T  26056501 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattgataatgaaccatgacattgattcaagtatatatgg 26056403  T
Q  365 ttataa 370  Q
    ||||||    
T  26056402 ttataa 26056397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 26065860 - 26065756
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||| |||||||    
T  26065860 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattgataatgaaccatgacattgattcaagtatatatgg 26065762  T
Q  365 ttataa 370  Q
    ||||||    
T  26065761 ttataa 26065756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 12852043 - 12851939
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  12852043 accaaaagttgtaactcttcatgggaaccattcatatacattgttacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 12851945  T
Q  365 ttataa 370  Q
    ||||||    
T  12851944 ttataa 12851939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 12857156 - 12857052
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  12857156 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 12857058  T
Q  365 ttataa 370  Q
    ||||||    
T  12857057 ttataa 12857052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 14610696 - 14610592
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  14610696 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 14610598  T
Q  365 ttataa 370  Q
    ||||||    
T  14610597 ttataa 14610592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 26051388 - 26051284
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  26051388 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 26051290  T
Q  365 ttataa 370  Q
    ||||||    
T  26051289 ttataa 26051284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 26060747 - 26060643
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  26060747 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 26060649  T
Q  365 ttataa 370  Q
    ||||||    
T  26060648 ttataa 26060643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 2248871 - 2248948
Alignment:
Q  228 taatggaatcagtttagaaccaaaatt-gtaactcttcaccaagagttgtaactcttcatgggaaccattcatataca 304  Q
    ||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  2248871 taatggaatcactttagaaccaaaagtagtaactcttcagcaagagttgtaactcttcatacgaaccattcatataca 2248948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 37459721 - 37459801
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattg 307  Q
    ||||||||||| |||| || ||||| || |||||||||||||| ||  | ||||||||||||||| |||||||||||||||    
T  37459721 taatggaatcactttaaaatcaaaagttttaactcttcaccaaaagcaggaactcttcatgggaatcattcatatacattg 37459801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 21276140 - 21276036
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  21276140 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 21276042  T
Q  365 ttataa 370  Q
    ||||||    
T  21276041 ttataa 21276036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 12909659 - 12909578
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  12909659 taatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaacttttcatgagaatcattcatatacattgg 12909578  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 12934766 - 12934685
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  12934766 taatggaatcactctagaaccaaaagttgtaactcttcaccaagagttgtaacttttcatgagaatcattcatatacattgg 12934685  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 21936426 - 21936505
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacatt 306  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| || | || |||||||||    
T  21936426 taatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactctttatggaaatcttttatatacatt 21936505  T

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Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 9872261 - 9872365
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  9872261 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 9872359  T
Q  365 ttataa 370  Q
    ||||||    
T  9872360 ttataa 9872365  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 9877376 - 9877480
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  9877376 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 9877474  T
Q  365 ttataa 370  Q
    ||||||    
T  9877475 ttataa 9877480  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 39904212 - 39904108
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  39904212 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 39904114  T
Q  365 ttataa 370  Q
    ||||||    
T  39904113 ttataa 39904108  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 2024449 - 2024353
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttag 323  Q
    ||||||||||| ||||||||||||| |||| | |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  2024449 taatggaatcactttagaaccaaaagttgttaatcttgaccaagagttgtaactcttcacgggaaccattcatatacattggaacattattatttag 2024353  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 39909325 - 39909221
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||| ||  ||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  39909325 accaaaagttgtaactcttcgtgtaaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 39909227  T
Q  365 ttataa 370  Q
    ||||||    
T  39909226 ttataa 39909221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 43540582 - 43540663
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  43540582 taattgaatcaatttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatggtaattattcatatacattgg 43540663  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 2023331 - 2023275
Alignment:
Q  314 tattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  2023331 tattatttattgatagataatgaaccatgacattgattcaagtgtgtatggttataa 2023275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 356
Target Start/End: Complemental strand, 4556000 - 4555871
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtga 326  Q
    ||||||||||| |||||||  |||| |||||||| || | ||| |||| || ||||||| || || |||||||||||||||  | ||||||||||| | |    
T  4556000 taatggaatcactttagaattaaaagttgtaactttttatcaaaagttatacctcttcacggaaatcattcatatacattgaaaaattattatttactta 4555901  T
Q  327 tagataatgaaccatgacattgattcaagt 356  Q
    |||||| |||||||| ||||||||||||||    
T  4555900 tagatagtgaaccataacattgattcaagt 4555871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 35368642 - 35368722
Alignment:
Q  229 aatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    |||||||||| ||||||| ||||| |||||||| |||| ||||||||||||||||| ||| ||| | ||||||||||||||    
T  35368642 aatggaatcactttagaatcaaaagttgtaacttttcatcaagagttgtaactctttatgagaatctttcatatacattgg 35368722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 13556141 - 13556184
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  13556141 accaagagttgtaactcttcatgggaatctttcatatacattgg 13556184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 14917219 - 14917323
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  14917219 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 14917317  T
Q  365 ttataa 370  Q
    ||||||    
T  14917318 ttataa 14917323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 370
Target Start/End: Complemental strand, 39178960 - 39178862
Alignment:
Q  271 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||||||||    
T  39178960 agttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatggttataa 39178862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 30283287 - 30283392
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| | || |||| ||||||||||||||||||||||| |||||||    
T  30283287 accaaaagttgtaactcttcatgggaaccattcatgtacattggaacattattattta-ttattgatactgaaccatgacattgattcaagtatatatgg 30283385  T
Q  365 ttataat 371  Q
    |||||||    
T  30283386 ttataat 30283392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 17720363 - 17720467
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  |||||||||||||||||||||| |||| |||||||    
T  17720363 accaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattgaagtatatatgg 17720461  T
Q  365 ttataa 370  Q
    ||||||    
T  17720462 ttataa 17720467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 370
Target Start/End: Complemental strand, 45120748 - 45120650
Alignment:
Q  271 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 370  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||||||||    
T  45120748 agttgtaactcttcatgggaaccattcatatacattgaaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatggttataa 45120650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 17720036 - 17720135
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  17720036 accaaaagttgtaactcttcatgggaactattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagtatatatgg 17720134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 20892116 - 20892203
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacatt 314  Q
    ||||||||||| |||| |||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  20892116 taatggaatcactttaaaaccaaaagttgtatcttttcaccaagagttgtaactcttcatgagaaccattcatatacattggaacatt 20892203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 42780578 - 42780497
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| ||||||||||||| |||| |||||| ||||| ||||||||||||||||| ||| | ||||||||||||||    
T  42780578 taatggaatcactttagaaccaaaagttgttactcttgaccaaaagttgtaactcttcatgagaatctttcatatacattgg 42780497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 20892252 - 20892284
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  20892252 taatgaaccataacattgattcaagtgtatatg 20892284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 42780475 - 42780443
Alignment:
Q  331 taatgaaccatgacattgattcaagtgtatatg 363  Q
    ||||||||||| |||||||||||||||||||||    
T  42780475 taatgaaccataacattgattcaagtgtatatg 42780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 1856 - 1960
Alignment:
Q  265 accaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatgg 364  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||| | ||  ||||||||||||||||||||||||||| |||||||    
T  1856 accaaaagttgtatctcttcatgggaaccattcatatacattggaacattactattta-ttattaataatgaaccatgacattgattcaagtatatatgg 1954  T
Q  365 ttataa 370  Q
    ||||||    
T  1955 ttataa 1960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 173748 - 173667
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  173748 taattgaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactattcatgggaatcattcatatacattgg 173667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 144475 - 144394
Alignment:
Q  228 taatggaatcagtttagaaccaaaa-ttgtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattgg 308  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  144475 taatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgagagtctttcatatacattgg 144394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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