View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15804_low_18 (Length: 358)

Name: NF15804_low_18
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15804_low_18
NF15804_low_18
[»] chr2 (3 HSPs)
chr2 (23-207)||(24412767-24412951)
chr2 (234-340)||(24412632-24412738)
chr2 (21-67)||(31579209-31579255)
[»] chr8 (4 HSPs)
chr8 (235-340)||(45487061-45487166)
chr8 (149-207)||(45486978-45487036)
chr8 (21-67)||(2744048-2744094)
chr8 (23-53)||(45486947-45486977)
[»] chr3 (5 HSPs)
chr3 (77-205)||(10829405-10829533)
chr3 (21-67)||(8757459-8757505)
chr3 (254-287)||(10829571-10829604)
chr3 (21-66)||(20861363-20861408)
chr3 (20-60)||(40318436-40318476)
[»] chr5 (2 HSPs)
chr5 (17-67)||(12682746-12682796)
chr5 (21-67)||(5123478-5123524)
[»] chr7 (3 HSPs)
chr7 (21-67)||(28665205-28665251)
chr7 (21-67)||(31492218-31492264)
chr7 (23-67)||(29059922-29059966)
[»] chr4 (1 HSPs)
chr4 (21-67)||(31307046-31307092)
[»] chr1 (1 HSPs)
chr1 (21-67)||(42297422-42297468)
[»] chr6 (2 HSPs)
chr6 (21-66)||(28099358-28099403)
chr6 (21-57)||(9536882-9536918)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 24412951 - 24412767
Alignment:
Q  23 gaggaattagtctccgcagttccgctcggaggatacccagtttacgnnnnnnngaagtgcatattggatatccctctcaaatatatgtactagattcggt 122  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||       | | |||||||||||||||||||||||||||||||||||||||||||    
T  24412951 gaggaattagtctccgcagttccgctaggaggatacccaatttacgaaaaaaagtactgcatattggatatccctctcaaatatatgtactagattcggt 24412852  T
Q  123 ttgaaattgaaaaatcaatgcaaaattttatttgaaccgactgaatgtaacaaaagaacaactaaacatatcaagtaatatttga 207  Q
    ||| ||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  24412851 ttggaattgaaaaatcaatgcgaaattttatttgaaccaaccgaatgtaacaaaagaacaactaaacatatcaagtaatatttga 24412767  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 24412738 - 24412632
Alignment:
Q  234 gttgtcaagtagtctagatggatttgtaattttaatttgaattgatttgaattttaagaccggccannnnnnngttaaccctccgatttctaaataatag 333  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| |||       |||||| |||||||||||||| |||||    
T  24412738 gttgtcaagtagtctagatgaatttgtaattttaatttgaattgatttgtatttcaagaccgaccatttttttgttaactctccgatttctaaaaaatag 24412639  T
Q  334 catcaat 340  Q
    | |||||    
T  24412638 cctcaat 24412632  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 31579255 - 31579209
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    ||||||||||||| ||||||||| ||| |||||||||||| ||||||    
T  31579255 tcgaggaattagtttccgcagttgcgcgcggaggatacccggtttac 31579209  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 45487061 - 45487166
Alignment:
Q  235 ttgtcaagtagtctagatggatttgtaattttaatttgaattgatttgaattttaagaccggccannnnnnngttaaccctccgatttctaaataatagc 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||       ||||||||||||||||||||| ||||||    
T  45487061 ttgtcaagtagtctagatggatttgtaattttaatttgaattgatttgaatttcaagaccgaccatttttttgttaaccctccgatttctaaaaaatagc 45487160  T
Q  335 atcaat 340  Q
    ||||||    
T  45487161 atcaat 45487166  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 45486978 - 45487036
Alignment:
Q  149 tttatttgaaccgactgaatgtaacaaaagaacaactaaacatatcaagtaatatttga 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45486978 tttatttgaaccgactgaatgtaacgaaagaacaactaaacatatcaagtaatatttga 45487036  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 2744048 - 2744094
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    |||||| |||||||||||||||| ||| |||||||||||| ||||||    
T  2744048 tcgagggattagtctccgcagttgcgcgcggaggatacccggtttac 2744094  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 45486947 - 45486977
Alignment:
Q  23 gaggaattagtctccgcagttccgctcggag 53  Q
    |||||||||||||||||||||||||||||||    
T  45486947 gaggaattagtctccgcagttccgctcggag 45486977  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 10829405 - 10829533
Alignment:
Q  77 aagtgcatattggatatccctctcaaatatatgtactagattcggtttgaaattgaaaaatcaatgcaaaattttatttgaaccgactgaatgtaacaaa 176  Q
    |||| ||||||||| |||||||||||| |||||||||||||||| || | ||||||||||| |||| ||| ||||||||||   ||  || ||| |||||    
T  10829405 aagtccatattggacatccctctcaaaaatatgtactagattcgattcggaattgaaaaattaatgaaaatttttatttgatttgaacgattgtcacaaa 10829504  T
Q  177 agaacaactaaacatatcaagtaatattt 205  Q
    || ||||||||| | ||||||||||||||    
T  10829505 agtacaactaaaaagatcaagtaatattt 10829533  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 8757459 - 8757505
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    |||||| |||||||||||||||| ||| |||||||||||| ||||||    
T  8757459 tcgagggattagtctccgcagttgcgcgcggaggatacccggtttac 8757505  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 10829571 - 10829604
Alignment:
Q  254 gatttgtaattttaatttgaattgatttgaattt 287  Q
    |||||||| |||||||||||||||||||||||||    
T  10829571 gatttgtagttttaatttgaattgatttgaattt 10829604  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 20861363 - 20861408
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagttta 66  Q
    |||||| ||||||||||||||||  || ||||||||||||||||||    
T  20861363 tcgagggattagtctccgcagttgtgcgcggaggatacccagttta 20861408  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 40318476 - 40318436
Alignment:
Q  20 ttcgaggaattagtctccgcagttccgctcggaggataccc 60  Q
    ||||||| |||||||||||||||| ||| ||||||||||||    
T  40318476 ttcgagggattagtctccgcagttgcgcgcggaggataccc 40318436  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 12682746 - 12682796
Alignment:
Q  17 atattcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    ||||||||||||||||||| ||||||| ||| |||||||||| ||||||||    
T  12682746 atattcgaggaattagtcttcgcagttgcgcgcggaggatactcagtttac 12682796  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 5123524 - 5123478
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    |||||| |||||||||||||||| ||| |||||||||||| ||||||    
T  5123524 tcgagggattagtctccgcagttgcgcgcggaggataccctgtttac 5123478  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 28665205 - 28665251
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    |||||| |||||||||||||||| | | |||||||||||||||||||    
T  28665205 tcgagggattagtctccgcagttgcacgcggaggatacccagtttac 28665251  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 31492218 - 31492264
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    |||||| |||||||||||||||| ||| |||||||||||| ||||||    
T  31492218 tcgagggattagtctccgcagttgcgcgcggaggatacccggtttac 31492264  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 29059922 - 29059966
Alignment:
Q  23 gaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    |||| |||||||||||||||| ||| |||||||||||| ||||||    
T  29059922 gagggattagtctccgcagttgcgcgcggaggatacccggtttac 29059966  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 31307092 - 31307046
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    |||||| |||||||||||||||| ||| |||||||||||| ||||||    
T  31307092 tcgagggattagtctccgcagttgcgcgcggaggatacccggtttac 31307046  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 42297468 - 42297422
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagtttac 67  Q
    |||||| |||||||||||||||| ||| ||||||||||| |||||||    
T  42297468 tcgagggattagtctccgcagttgcgcgcggaggatacctagtttac 42297422  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 28099358 - 28099403
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggatacccagttta 66  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||    
T  28099358 tcgagggattagtctccgcagttgcgagcggaggatacccagttta 28099403  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 9536882 - 9536918
Alignment:
Q  21 tcgaggaattagtctccgcagttccgctcggaggata 57  Q
    |||||| |||||||||||||||| |||||||||||||    
T  9536882 tcgagggattagtctccgcagttgcgctcggaggata 9536918  T

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