View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_19 (Length: 354)
Name: NF15804_low_19
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 33 - 346
Target Start/End: Original strand, 4635821 - 4636134
Alignment:
| Q |
33 |
tattatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcatacttaattttctattttatgtcttcacaggagttgattga |
132 |
Q |
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| T |
4635821 |
tattatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcatacttaattttctattttatgtcttcacaggagttgattga |
4635920 |
T |
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| Q |
133 |
tctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaatttatttaacaaaatatgaaactacagataagagccaatacgac |
232 |
Q |
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| T |
4635921 |
tctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcaatgtaatttacttaacaaaatatgaaactacagataagagccaatatgac |
4636020 |
T |
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| Q |
233 |
tcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgcta |
332 |
Q |
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| T |
4636021 |
tcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgcta |
4636120 |
T |
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| Q |
333 |
ctatcatctgtgct |
346 |
Q |
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| T |
4636121 |
ctataatctatgct |
4636134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 99 - 346
Target Start/End: Original strand, 4659044 - 4659291
Alignment:
| Q |
99 |
ttttctattttatgtcttcacaggagttgattgatctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaatttatttaac |
198 |
Q |
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| T |
4659044 |
ttttgtattttatgtcttcgcaggagttgattgatctaggggcacgcacgcttatggtccctggaaatttcccattgggatgtagtgcagtccatttaac |
4659143 |
T |
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| Q |
199 |
aaaatatgaaactacagataagagccaatacgactcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgag |
298 |
Q |
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| T |
4659144 |
aacgtatgaaaccacggataagaaccaatatgactcatttggttgcttgaagtggttaaatgaattttctgaattttataaccagaaactccaacatgag |
4659243 |
T |
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| Q |
299 |
ttacataggctaagaagaattcatcctcatgctactatcatctgtgct |
346 |
Q |
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| T |
4659244 |
atacataggcttcgagtaattcatcctcatgctaatatcatctatgct |
4659291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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