View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_2 (Length: 660)
Name: NF15804_low_2
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Original strand, 8167184 - 8167816
Alignment:
| Q |
18 |
caaggatgcatctaaattaagcttcaattttaccaaagaagtcttaaattgctcaagagattccaaagccatatcatcaatagaatgaccccaccagcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8167184 |
caaggatgcatctaaattaagcttcaattttaccaaagaagtcttaaattgctcaagagattccaaagccatatcatcaatagaatgaccccaccagcaa |
8167283 |
T |
|
| Q |
118 |
gaaaaacatgaactactcttgtttctctcttttattccttctaaataattattctcttcttccagccgttcttcaattgcctcatgttgaaaccttaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8167284 |
gaaaaacatgaactactcttgtttctctcttttacaccttctaaataattattctcttctttcagccgttcttcaattgcctcatgttgaaaccttaagg |
8167383 |
T |
|
| Q |
218 |
tttcaactacgccctcat---cttgcttccttttgtcagtgtcgatgactgggttttccctatcgagaaagtgtttaatgacggtgttagggttagggta |
314 |
Q |
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|||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8167384 |
tttcaactacgccctcatgatcctgcttccttttgtcagcgtcgatgactgggttttccctatcgagaaagtgtttaatgacggtgttagggttagggta |
8167483 |
T |
|
| Q |
315 |
accacaaacgtagagtttttcgtttggtgaagtgatgatcattgcagtttttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagt |
414 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |
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| T |
8167484 |
accacaaacgtagagttttccgtttggtgaagtgatgatcattgcagtttttgcattgcataggatagatagttctgtaactttgttgaagagccctagt |
8167583 |
T |
|
| Q |
415 |
ttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttcttgattttaatggt---tctcttacgtttgttgttgctttttgttgatgtgt |
511 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8167584 |
ttgcgttttgagaaggtatcgaggggcttgtttgattgttctgctttcttgattttaatggttgatctcttacgtttgttgttgctttttgttgatgtgt |
8167683 |
T |
|
| Q |
512 |
tgtttccgtctgaagaagccattggatctttcttccaagaggagaaagagggaagaaagaactcaataaccaaatatgaaagaaaactttgttttgttcc |
611 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8167684 |
tgtttccgtttgaagaagccattggatctttcttccaagaggagaaagagggaagaaagaactcaataaccaaatatgaaagaaaactttgttttggtcc |
8167783 |
T |
|
| Q |
612 |
caaaatatggaactgactctttcttttttagaa |
644 |
Q |
| |
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||||||||||||| ||||||||||||| ||||| |
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| T |
8167784 |
caaaatatggaaccgactctttcttttatagaa |
8167816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 518
Target Start/End: Original strand, 8999198 - 8999351
Alignment:
| Q |
365 |
ttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttctt |
464 |
Q |
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|||||||||| | ||| |||||| ||| ||||| |||||||| |||| ||||||||||||||||| ||| ||||||| |||| |||| ||||||| |
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| T |
8999198 |
ttgcattgcataaaatgaatagttatgtgactttgttgaagagtcctaatttgcgttttgagaaggtatcatccagcttgttagattcttctactttctt |
8999297 |
T |
|
| Q |
465 |
gattttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttcc |
518 |
Q |
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|||| | || |||||||| || ||| |||| ||||||| || || ||||||| |
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| T |
8999298 |
aatttcattgattctcttaggtgtgtcgttgtgttttgttaatatgatgtttcc |
8999351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 552
Target Start/End: Original strand, 50707258 - 50707789
Alignment:
| Q |
22 |
gatgcatctaaattaagcttcaattttaccaaagaagtcttaaattgctcaagagattccaaagccatatcatcaatagaatgaccccaccagcaagaaa |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| || |
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| T |
50707258 |
gatgcatctaaattaagcttcaattttttcaaagaagtcttaaattgcttaagagattccaaagccatatcatcaatagaatgatcccaccaagaaggaa |
50707357 |
T |
|
| Q |
122 |
aacatgaactactcttgtttctctcttttattccttctaaataattattctcttcttccagccgttcttcaattgcctcatgttgaaaccttaaggtttc |
221 |
Q |
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| T |
50707358 |
ggcatgaactactgttgtttgtctcttttacagcttgtaaattattcttctcttctttcagccgttcttgaattgtctcatgttgaagccttgaggtttc |
50707457 |
T |
|
| Q |
222 |
aactacgccctcatcttgcttccttttgtcagtgtcgatgactgggttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaa |
321 |
Q |
| |
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|| | | |||||||||||||| ||| ||||||| |||||||||||||||| |||||| ||||||||||||||| |||| | |||||||||| || || |
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| T |
50707458 |
aattgtgtactcatcttgcttccctttttcagtgttgatgactgggttttccttatcgaaaaagtgtttaatgacagtgtcatggttagggtatccgcat |
50707557 |
T |
|
| Q |
322 |
acgtagagtttttcgtttggtgaagtgatgatcattgcagtttttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgtt |
421 |
Q |
| |
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| | ||| |||| |||||||||||||||||||| ||| |||||||||||||| ||||| |||| |||||| ||||| |||||||| ||||||||||| | |
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| T |
50707558 |
gcatggagatttttgtttggtgaagtgatgatcagtgcggtttttgcattgcatagaatggataattctgttactttgttgaagagtcctagtttgcgct |
50707657 |
T |
|
| Q |
422 |
ttgagaaggaatcgcggggcttgtttgattgttctgctttcttgattttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttccgtc |
521 |
Q |
| |
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|||| |||| ||| || ||||||| ||| | | |||||||||||||| ||||||| |||| ||| |||| | | ||||||||| ||||||||||| || |
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| T |
50707658 |
ttgaaaaggtatcacgccgcttgttcgatggctttgctttcttgatttcaatggttttcttccgtgagttgcttcgttttgttgacgtgttgtttccatc |
50707757 |
T |
|
| Q |
522 |
tg-aagaagccattggatctttcttccaagag |
552 |
Q |
| |
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| |||||||||||| |||||||||||||||| |
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| T |
50707758 |
cgtaagaagccattgaatctttcttccaagag |
50707789 |
T |
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