View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_20 (Length: 354)
Name: NF15804_low_20
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 53673943 - 53674279
Alignment:
| Q |
3 |
catgtccaagaatatccaactccataaggaattctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttttccattaca |
102 |
Q |
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| T |
53673943 |
catgtccaataatacccaactccataaggaattctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttctccattaca |
53674042 |
T |
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| Q |
103 |
aagatcacctttgtatacctctgagtaccctcctcttccaactaaattatctattttcaaagaaaccaaaaatgaatgagtatattagaaacctcaattc |
202 |
Q |
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| T |
53674043 |
aagatcacctttgtatacttctgagtaccctcctcttccaactaaattatctattttcaaagaaacaaaaaatgaatgagtatattagaaacctcaattc |
53674142 |
T |
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| Q |
203 |
aatgtttcatatgacattaaaaataagattaattatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaagcacttcaacaagg |
302 |
Q |
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| T |
53674143 |
aatgtttcatatgacattaaaaataacattaataatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaagcaattcaacaagg |
53674242 |
T |
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| Q |
303 |
gttgatgtttttcaattttggacatgttgaaggtttt |
339 |
Q |
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| T |
53674243 |
gttgatgtttttcaattttggacatgttgaaggtttt |
53674279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 53671329 - 53671451
Alignment:
| Q |
35 |
tctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttttccattacaaagatcacctttgtatacctctgagta----- |
129 |
Q |
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| T |
53671329 |
tctttttccttgtttggatctttgttgtcttaggctaacctcttcacaacaatggtttctccattacaaagatcaccattgtataattctgagtaacctc |
53671428 |
T |
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| Q |
130 |
ccctcctcttccaactaaattat |
152 |
Q |
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| T |
53671429 |
ccctcctcttccaaccaaattat |
53671451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 314
Target Start/End: Original strand, 53671717 - 53671842
Alignment:
| Q |
190 |
gaaacctcaattcaatgtttcatatgacatt-aaaaataagattaattatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaa |
288 |
Q |
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||||| |||||||||||||| || ||| || |||||||| | | || ||| |||||||||| ||| ||| | |||||| || ||||||||| ||||||| |
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| T |
53671717 |
gaaacatcaattcaatgttttctacgaccttgaaaaataacactgatcataaaccttggtgacagtgatttgcagcattggaaatattttcacagctgaa |
53671816 |
T |
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| Q |
289 |
gcacttcaacaagggttgatgttttt |
314 |
Q |
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| T |
53671817 |
gcactatagcaaaggttgatgctttt |
53671842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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