View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_21 (Length: 349)
Name: NF15804_low_21
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 7297673 - 7297342
Alignment:
| Q |
1 |
ttatcatttgaatttaaacaatattcgttaaatctgagaagtacacatgttgtatggtacacatttaagttctaaacagaagtacagcttaagagaatac |
100 |
Q |
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| T |
7297673 |
ttatcatttgaatttaaacaatattcgttaaatctgagaagtacacatgttgtatggtacacatttaagttctaaacagaagtacagcttaagagaatac |
7297574 |
T |
|
| Q |
101 |
aacaaactgccatcattcaaataaagatgcacaatatgtagctaaaccaatttagtgctacacggcaaccctccaacaaaaacaaaacctgctaaacaat |
200 |
Q |
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| T |
7297573 |
aacaaactgccatcattcaaataaagatgcacaatatgtagctaaaccaatttagtgctacacggcaaccctccaacaaaaacaaaacctgctaaacaat |
7297474 |
T |
|
| Q |
201 |
actattttcttctacctaaaaaatgtagttgtccaacaccaacaaagtttgatcacatacaatccttttatgtgaggcctaatttgttgcttcaattgga |
300 |
Q |
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| T |
7297473 |
actattttcttctacctaaaaaatgtagttgtccaacaccaacaaagtttgatcacatacaatccttttatgtgaggcctaatttgttgcttcaattgga |
7297374 |
T |
|
| Q |
301 |
cttcaatttgttagtatctgcattatttcgtg |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
7297373 |
cttcaatttgttagtatctgcattatttcgtg |
7297342 |
T |
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