View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_22 (Length: 343)
Name: NF15804_low_22
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 7934641 - 7934946
Alignment:
| Q |
25 |
attgttacaatatgttccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccatttagtgac |
124 |
Q |
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| T |
7934641 |
attgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccatttagtgac |
7934740 |
T |
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| Q |
125 |
tacctatgatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttatctccattacaaac |
224 |
Q |
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| T |
7934741 |
tacctaggatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttgtctccattacaaac |
7934840 |
T |
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| Q |
225 |
aaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggcctt-gcataattgtccacactgataccctcc |
323 |
Q |
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| T |
7934841 |
aaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggccttcacataattgtccacactgataccctcc |
7934940 |
T |
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| Q |
324 |
cctttg |
329 |
Q |
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|||||| |
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| T |
7934941 |
cctttg |
7934946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7934577 - 7934640
Alignment:
| Q |
1 |
ttttgttcgttattctttcattctattgttacaatatgttccatagacgagttctttgtttctc |
64 |
Q |
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|||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
7934577 |
ttttgttcattattctttcattccattgttacaatatgtgccatagacgagttctttgtttctc |
7934640 |
T |
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