View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_23 (Length: 335)
Name: NF15804_low_23
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 38821541 - 38821843
Alignment:
| Q |
1 |
cttacctgtaagattttttaaactactacaaaattttagtacgtcttcaacaataaggttttaaatgttcatattattctataatttatttttgacagag |
100 |
Q |
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| T |
38821541 |
cttaccagtaagattttttaaactactacaaaattttagtacgtcttcaacaatatggttttaaatgttcatattattctataatttatttttgacagag |
38821640 |
T |
|
| Q |
101 |
tatgtactctatgtaacaggataacaaa---tagtatatgggaaataaagaaataacaaattcaaagatctatcttcaaaatgtaaacaaagtgttaaat |
197 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
38821641 |
tatgtactctatgtaacagaataacaaatagtagtatatgggaaataaagaaataacaaattcaaaggtctatcttcaaaatgtaaacaaagagttaaat |
38821740 |
T |
|
| Q |
198 |
tgcaac-------attagtattcagattaaaatattgctacaattagaactgaagattcacacatagagccaatactactaactatccaatttagggtaa |
290 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38821741 |
tgcaacattactgattagtattcagattaaaatagtgctacaattagaactgaagattcacacatagagcaaatactactaactatccaatttagggtaa |
38821840 |
T |
|
| Q |
291 |
cga |
293 |
Q |
| |
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||| |
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|
| T |
38821841 |
cga |
38821843 |
T |
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