View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_25 (Length: 319)
Name: NF15804_low_25
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 31 - 310
Target Start/End: Original strand, 18738066 - 18738345
Alignment:
| Q |
31 |
ttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactctttgcaattctcggtgaatggatgatcttgattctcgc |
130 |
Q |
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| T |
18738066 |
ttcacaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactgcactctttgcaattctcggtgaatggatgatcttgattctcgc |
18738165 |
T |
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| Q |
131 |
atgttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcaca |
230 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18738166 |
atgttcgattgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccaatggaaaaactttcaca |
18738265 |
T |
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| Q |
231 |
gctaacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattccctatgactctcttcatctctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
18738266 |
gctaacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattcactatgactctcttcatttctc |
18738345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 34 - 310
Target Start/End: Original strand, 18671397 - 18671673
Alignment:
| Q |
34 |
acaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactctttgcaattctcggtgaatggatgatcttgattctcgcatg |
133 |
Q |
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| T |
18671397 |
acaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactgcactctttgcaattcttggtgaatggatgatcttgattcttgcatg |
18671496 |
T |
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| Q |
134 |
ttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcacagct |
233 |
Q |
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| T |
18671497 |
ttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcacagcc |
18671596 |
T |
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| Q |
234 |
aacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattccctatgactctcttcatctctc |
310 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||| |
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| T |
18671597 |
aacttgggtgttgagtttcttgcagaacactccaacactattggaagcacagttcactatgattctcttcatttctc |
18671673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 34 - 307
Target Start/End: Original strand, 18648939 - 18649212
Alignment:
| Q |
34 |
acaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactctttgcaattctcggtgaatggatgatcttgattctcgcatg |
133 |
Q |
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| T |
18648939 |
acaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactctttgcaattcttggtgaatggatgatcttgattctcacatg |
18649038 |
T |
|
| Q |
134 |
ttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcacagct |
233 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18649039 |
ttcaatcgcattgttcttcgttcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcaaagcc |
18649138 |
T |
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| Q |
234 |
aacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattccctatgactctcttcatct |
307 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18649139 |
aacttaggtgtcgagtttcttgcggaacactccaacactattggaagcacaattcactatgactctcttcatct |
18649212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 34 - 307
Target Start/End: Original strand, 18717403 - 18717677
Alignment:
| Q |
34 |
acaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactctttgcaattctc-ggtgaatggatgatcttgattctcgcat |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18717403 |
acaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactgcactctttgcaattctttggtgaatggatgatcttgattctcgcat |
18717502 |
T |
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| Q |
133 |
gttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcacagc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18717503 |
gttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccgatggaaaaaccttcacagc |
18717602 |
T |
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| Q |
233 |
taacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattccctatgactctcttcatct |
307 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
18717603 |
caacttaggtgtcgagtttcttgcggaacactccaacactattggaagcacaattcactatgactatcttcatct |
18717677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 34 - 305
Target Start/End: Original strand, 18684671 - 18684942
Alignment:
| Q |
34 |
acaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactctttgcaattctcggtgaatggatgatcttgattctcgcatg |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
18684671 |
acaccattgatcttgatgattcatctttgaatcaagcttatgcaacagcaactacactcttcgcaattcttggtgaatggatgatcttgattctcacatg |
18684770 |
T |
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| Q |
134 |
ttcgatcgcattgttcttcattcctctaactccttctttcacactccattcaacaacttcaactgttcttaatgtcaccaatggaaaaaccttcacagct |
233 |
Q |
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||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18684771 |
ttcgatcgccttgttcttcatccccctaactccttctttcacactccattcaacaacttcaactgttcttaatgttaccaatggaaaaaccttcacagcc |
18684870 |
T |
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| Q |
234 |
aacttgggtgtcgagtttcttgcagaacactccaacactattggaagcacaattccctatgactctcttcat |
305 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
18684871 |
aacttgggtgtcgagtttcttgcggaatactccaacactattggaagcacaattcactatgattctcttcat |
18684942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 18665862 - 18665904
Alignment:
| Q |
263 |
ctccaacactattggaagcacaattccctatgactctcttcat |
305 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18665862 |
ctccaacactattggaagcacaattcactatgactctcttcat |
18665904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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