View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_26 (Length: 311)
Name: NF15804_low_26
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 4128997 - 4129280
Alignment:
| Q |
18 |
atcacaagttcagctaacatctggaggactcacgttgacaactcaacaaggtgaatccatttggacagcacaaccaaacacagctgtttcctatggaatc |
117 |
Q |
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| T |
4128997 |
atcacaagttcagctaacatcaggaggactcacgttgacaactcaacaaggtgaatccatttggacagcacaaccaaacacagctgtttcctatggaatc |
4129096 |
T |
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| Q |
118 |
atgcatgatactggaaactttgttcttgttaataagaattcttctattgtttgggaaagtttcaagtttcccactgacacccttttgcctaatcaatctc |
217 |
Q |
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| T |
4129097 |
atgcatgatactggaaactttgttcttgttaataagaattcttctattgtttgggaaagtttcaagtttcccaccgacacccttttgcctaatcaatctc |
4129196 |
T |
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| Q |
218 |
ttgaattaggtggaaacataacttctagattttcagagaccaattacacaagtgggaggttccaactttattttcgtgatgatg |
301 |
Q |
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| T |
4129197 |
ttgaattaggtggaaacataacttctagattttcagagaccaactacacaagtgggaggttccaactttattttcgtgatgatg |
4129280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 4105807 - 4106090
Alignment:
| Q |
18 |
atcacaagttcagctaacatctggaggactcacgttgacaactcaacaaggtgaatccatttggacagcacaaccaaacacagctgtttcctatggaatc |
117 |
Q |
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|||||| |||||||||||||| || |||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
4105807 |
atcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacagcacaaccaaacgatattgtttcctatggaacc |
4105906 |
T |
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| Q |
118 |
atgcatgatactggaaactttgttcttgttaataagaattcttctattgtttgggaaagtttcaagtttcccactgacacccttttgcctaatcaatctc |
217 |
Q |
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| T |
4105907 |
atgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtttcctactgatacccttttgcctaatcaatcac |
4106006 |
T |
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| Q |
218 |
ttgaattaggtggaaacataacttctagattttcagagaccaattacacaagtgggaggttccaactttattttcgtgatgatg |
301 |
Q |
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|||| ||||||| | | ||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
4106007 |
ttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaagtggaaggttccaactttattttaatgatgatg |
4106090 |
T |
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