View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_29 (Length: 290)
Name: NF15804_low_29
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 34 - 275
Target Start/End: Original strand, 49811628 - 49811862
Alignment:
| Q |
34 |
ttatactccacattcaaaaatatgttttgcgtttgagaataaaatttgcggtctttactttacaaaccaatatgtgttctcgataatatttttaaatttc |
133 |
Q |
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| T |
49811628 |
ttatactccacattcaaaaatatgttttgcgtttgagaataaaatttgcggtctttactttacaaaccaatatgtgttctcgataatatttttaaatttc |
49811727 |
T |
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| Q |
134 |
aaaccataaatgaatgacttgttcaaaaaagcataagtgaatgatgtttaatatctatctattactacattttcatattttgtttttcatatattccctc |
233 |
Q |
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| T |
49811728 |
aaaccataaatgaatgacttgttcaaaaaagcataagtggatgatgtttaa----tatctattactacattttcatattttgtttttcataggttccctc |
49811823 |
T |
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| Q |
234 |
tatattcaaaatcnnnnnnntattggacattatatatagata |
275 |
Q |
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| T |
49811824 |
--tattcaaaatc-aaaacatattggacattatatatagata |
49811862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49811403 - 49811444
Alignment:
| Q |
1 |
cattgaatgacttttacatcgtctgcatatccattatactcc |
42 |
Q |
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| T |
49811403 |
cattgaatgacttttacatcttctgcatatccattatactcc |
49811444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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