View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15804_low_30 (Length: 281)
Name: NF15804_low_30
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 28946418 - 28946680
Alignment:
| Q |
18 |
attactggaatcacaaatctcaacagcattcttcttattcttcgaattcctcgtggccctcgcattcttcggttctacagcatccaaattcacattagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28946418 |
attactggaatcacaaatctcaacagcattcttcttattcttcgaattcctcgtggccctagcattcttcggttctacaggatccaaattcacattagta |
28946517 |
T |
|
| Q |
118 |
gaatcagtaacaattttcctgctccgcgtattcctcgtaaccttcgttggttcaggtcgatccacaattccatcttcatcatcaccattcaacattccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28946518 |
gaatcagtaacaattttcctgctccgcgtattcctcgtaaccttcgttggttcaggtcgatccacaattccatcttcatcatcaccattcaacattccat |
28946617 |
T |
|
| Q |
218 |
cttcatcaatactctgtaccggaaccctaaatttaacacttttaccactattccctttgttac |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28946618 |
cttcatcaatactctgtaccggaaccctaaatttaacacttttaccactattcccttttttac |
28946680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 28946307 - 28946376
Alignment:
| Q |
18 |
attactggaatcacaaatctcaacagcattcttcttattcttcgaattcctcgtggccctcgcattcttc |
87 |
Q |
| |
|
|||||| ||||||||||| | | | ||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
28946307 |
attacttgaatcacaaattttagccacattcttcttattcttcgaattccttgtcaccctcacattcttc |
28946376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 34823781 - 34824043
Alignment:
| Q |
18 |
attactggaatcacaaatctcaacagcattcttcttattcttcgaattcctcgtggccctcgcattcttcggttctacagcatccaaattcacattagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34823781 |
attactggaatcacaaatctcaacagcattcttcttattcttcgaattcctcgtggcccttgcattcttcggttctacagtatccaaattcacattagta |
34823880 |
T |
|
| Q |
118 |
gaatcagtaacaattttcctgctccgcgtattcctcgtaaccttcgttggttcaggtcgatccacaattccatcttcatcatcaccattcaacattccat |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34823881 |
gaatcagtaacaattttcctgctccgcttattcctcgtaaccttctttggttcaggtcgatccacaattccatcttcatcatcaccattcaacattccat |
34823980 |
T |
|
| Q |
218 |
cttcatcaatactctgtaccggaaccctaaatttaacacttttaccactattccctttgttac |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34823981 |
cttcatcaatactctgtaccggaaccctaaatttaacacttttaccactattcccttttttac |
34824043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 34823670 - 34823739
Alignment:
| Q |
18 |
attactggaatcacaaatctcaacagcattcttcttattcttcgaattcctcgtggccctcgcattcttc |
87 |
Q |
| |
|
|||||| ||||||||||| | | | ||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
34823670 |
attacttgaatcacaaattttagccacattcttcttattcttcgaattccttgtcaccctcacattcttc |
34823739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 42232254 - 42232052
Alignment:
| Q |
27 |
atcacaaatctcaacagcattcttcttattcttcgaattcctcgtggccctcgcattcttcggttctacagca---tccaaattcacattagtagaatca |
123 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| | |||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
42232254 |
atcacaaatctcaactgcattcttcttattcttcgaattcctcgacaccctcacattcttagattctacagcagcatccaaatacacatgagtagaatca |
42232155 |
T |
|
| Q |
124 |
gtaacaattttcctgctccgcgtattcctcgtaaccttcgttggttcaggtcgatccacaattccatc---ttcatcatcaccattcaacattccatctt |
220 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
42232154 |
gaaacaacgttcctgctccgcgtattcctcgtaaccttcatcggttgaggtcgatctacaattccaccagattcataatcaccattcaacattccatctt |
42232055 |
T |
|
| Q |
221 |
cat |
223 |
Q |
| |
|
||| |
|
|
| T |
42232054 |
cat |
42232052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 42232356 - 42232287
Alignment:
| Q |
18 |
attactggaatcacaaatctcaacagcattcttcttattcttcgaattcctcgtggccctcgcattcttc |
87 |
Q |
| |
|
|||||| |||||||||| |||||| | ||||||||| |||||||||||||| || ||||| |||||||| |
|
|
| T |
42232356 |
attactcgaatcacaaacctcaactgtattcttcttgttcttcgaattccttgtcaccctcacattcttc |
42232287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University