View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15804_low_31 (Length: 273)

Name: NF15804_low_31
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15804_low_31
NF15804_low_31
[»] chr4 (13 HSPs)
chr4 (102-271)||(3394494-3394664)
chr4 (108-240)||(17212415-17212543)
chr4 (106-151)||(53267504-53267549)
chr4 (205-240)||(53267410-53267445)
chr4 (106-140)||(373071-373105)
chr4 (229-271)||(18413970-18414012)
chr4 (205-240)||(46815394-46815429)
chr4 (104-138)||(13867414-13867448)
chr4 (229-271)||(40962490-40962532)
chr4 (101-134)||(49261417-49261450)
chr4 (104-140)||(13867419-13867455)
chr4 (212-240)||(33163284-33163312)
chr4 (104-136)||(46815502-46815534)
[»] chr1 (11 HSPs)
chr1 (160-273)||(18843696-18843815)
chr1 (170-261)||(47983920-47984011)
chr1 (180-240)||(5767333-5767393)
chr1 (205-244)||(50067112-50067151)
chr1 (102-140)||(27034449-27034487)
chr1 (104-145)||(50067243-50067284)
chr1 (205-240)||(27034343-27034378)
chr1 (205-240)||(45690362-45690397)
chr1 (105-151)||(47487021-47487067)
chr1 (205-236)||(47486931-47486962)
chr1 (109-145)||(45690261-45690297)
[»] chr5 (7 HSPs)
chr5 (170-261)||(10399023-10399114)
chr5 (205-259)||(40014112-40014166)
chr5 (104-139)||(3459953-3459988)
chr5 (102-145)||(19401547-19401590)
chr5 (205-240)||(19401656-19401691)
chr5 (205-267)||(3460059-3460119)
chr5 (229-261)||(19044133-19044165)
[»] chr2 (5 HSPs)
chr2 (166-239)||(16710003-16710076)
chr2 (102-240)||(20149259-20149395)
chr2 (102-147)||(22494467-22494512)
chr2 (205-240)||(22494575-22494610)
chr2 (229-271)||(20149396-20149438)
[»] chr6 (3 HSPs)
chr6 (117-271)||(23911917-23912071)
chr6 (102-151)||(35054971-35055020)
chr6 (209-240)||(35054877-35054908)
[»] chr8 (7 HSPs)
chr8 (123-240)||(3964298-3964415)
chr8 (102-145)||(43636722-43636765)
chr8 (205-271)||(43636591-43636655)
chr8 (108-140)||(1931746-1931778)
chr8 (205-240)||(33775539-33775574)
chr8 (229-271)||(43835115-43835157)
chr8 (224-268)||(3964250-3964294)
[»] chr3 (13 HSPs)
chr3 (102-240)||(6755368-6755505)
chr3 (110-258)||(6463262-6463410)
chr3 (104-151)||(42384245-42384292)
chr3 (105-151)||(53825978-53826024)
chr3 (106-151)||(2323871-2323916)
chr3 (101-146)||(14995600-14995645)
chr3 (205-240)||(42384350-42384385)
chr3 (205-240)||(42949053-42949088)
chr3 (229-271)||(25886286-25886328)
chr3 (205-240)||(2323977-2324012)
chr3 (229-271)||(6755506-6755548)
chr3 (108-145)||(42949153-42949190)
chr3 (205-234)||(53825890-53825919)
[»] chr7 (10 HSPs)
chr7 (109-151)||(20378042-20378084)
chr7 (205-240)||(20377948-20377983)
chr7 (108-147)||(21613417-21613456)
chr7 (104-151)||(26500793-26500840)
chr7 (205-240)||(26500899-26500934)
chr7 (205-240)||(26591779-26591814)
chr7 (104-151)||(26591873-26591920)
chr7 (104-138)||(48219838-48219872)
chr7 (224-271)||(3749968-3750015)
chr7 (205-235)||(21613323-21613353)
[»] scaffold1700 (2 HSPs)
scaffold1700 (205-240)||(882-917)
scaffold1700 (106-151)||(779-824)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 271
Target Start/End: Original strand, 3394494 - 3394664
Alignment:
Q  102 ttcctggggtaaaactaaatctgcacatttagttttacctaatctgattcnnnnnnnnccaagttagttgctcattaatcatctttttatccccagaatt 201  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | |||        |||||  || |||| | |||||||||||||||||||| ||||    
T  3394494 ttcctggggtaaaactaaatctgcacatttagttttacccaatcagcttctttttttcccaagaaagctgctaactaatcatctttttatccccaaaatt 3394593  T
Q  202 tgcttctttctctttttacaccaaaataaagaaggaaaagaaggagattcat-agggggagggagtgagga 271  Q
        ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||    
T  3394594 gatctctttctctttttacaccaaaataaagaagggaaaaaaggagattcataagggggagagagtgagga 3394664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 17212415 - 17212543
Alignment:
Q  108 gggtaaaactaaatctgcacatttagttttacctaatctgattcnnnnnnnnccaagttagttgctcattaatcatctttttatccccagaatttgcttc 207  Q
    ||||||||||||||||||| ||||||||||||| |||||| |||        |||||  || | |||| || ||||| ||||||||||||||||  |  |    
T  17212415 gggtaaaactaaatctgcagatttagttttaccgaatctggttctttttc--ccaagaaagcttctcactactcatcattttatccccagaattgac--c 17212510  T
Q  208 tttctctttttacaccaaaataaagaaggaaaa 240  Q
    |||||||||||||||||||||||||||||||||    
T  17212511 tttctctttttacaccaaaataaagaaggaaaa 17212543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 53267549 - 53267504
Alignment:
Q  106 tggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||    
T  53267549 tggggtaaaactaaatctgcacatttagttttatccaatctgattc 53267504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 53267445 - 53267410
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  53267445 ttctttctctttttacaccaaaataaagaaggaaaa 53267410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 373105 - 373071
Alignment:
Q  106 tggggtaaaactaaatctgcacatttagttttacc 140  Q
    |||||||||||||||||||||||||||||||||||    
T  373105 tggggtaaaactaaatctgcacatttagttttacc 373071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 18413970 - 18414012
Alignment:
Q  229 aaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  18413970 aaagaaggaaaagaaggagatttatagggggagagagtgagga 18414012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 46815429 - 46815394
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||| ||||||||    
T  46815429 ttctttctctttttacaccaaaataaaaaaggaaaa 46815394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 13867414 - 13867448
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagtttta 138  Q
    ||||||||||||||||||||||| |||||||||||    
T  13867414 cctggggtaaaactaaatctgcagatttagtttta 13867448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 40962490 - 40962532
Alignment:
Q  229 aaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    |||||||||||||||||||||||||| ||||||  ||||||||    
T  40962490 aaagaaggaaaagaaggagattcatatggggagatagtgagga 40962532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 49261417 - 49261450
Alignment:
Q  101 tttcctggggtaaaactaaatctgcacatttagt 134  Q
    |||| |||||||||||||||||||||||||||||    
T  49261417 tttcatggggtaaaactaaatctgcacatttagt 49261450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 13867455 - 13867419
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagttttacc 140  Q
    |||||| |||||||||||||||| |||||||||||||    
T  13867455 cctgggataaaactaaatctgcagatttagttttacc 13867419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 33163312 - 33163284
Alignment:
Q  212 tctttttacaccaaaataaagaaggaaaa 240  Q
    |||||||||||||||||||||||||||||    
T  33163312 tctttttacaccaaaataaagaaggaaaa 33163284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 46815534 - 46815502
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagttt 136  Q
    |||||||||||||||||||| ||||||||||||    
T  46815534 cctggggtaaaactaaatctacacatttagttt 46815502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 160 - 273
Target Start/End: Original strand, 18843696 - 18843815
Alignment:
Q  160 ccaagttagttgctcattaatcatctttttatccccagaatttgcttctttctctttttacacca------aaataaagaaggaaaagaaggagattcat 253  Q
    ||||||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||  |      ||| |||||||||||||||||||||||||    
T  18843696 ccaagttagatgctcattaatcatctttttattcccatagtttgcttctttctctttttacataaagaaggaaaaaaagaaggaaaagaaggagattcat 18843795  T
Q  254 agggggagggagtgaggaaa 273  Q
    ||||||||||||||||||||    
T  18843796 agggggagggagtgaggaaa 18843815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 47984011 - 47983920
Alignment:
Q  170 tgctcattaatcatctttttatccccagaatttgcttctttctctttttacaccaaaataaagaaggaaaagaaggagattcatagggggag 261  Q
    |||||| || ||||| |||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  47984011 tgctcactactcatcattttattcccaaaatttgcctctttatctttttacaccaaaataaagaaggaaaaaaaggagattcataaggggag 47983920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 5767333 - 5767393
Alignment:
Q  180 tcatctttttatccccagaatttgcttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||| |||||||| || |||| || |||||||||||||||||||||||||||||||||||    
T  5767333 tcatcattttatcctcataattggcctctttctctttttacaccaaaataaagaaggaaaa 5767393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 50067151 - 50067112
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaagaag 244  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50067151 ttctttctctttttacaccaaaataaagaaggaaaagaag 50067112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 27034487 - 27034449
Alignment:
Q  102 ttcctggggtaaaactaaatctgcacatttagttttacc 140  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27034487 ttcctggggtaaaactaaatctgcacatttagttttacc 27034449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 50067284 - 50067243
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagttttacctaatc 145  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  50067284 cctggggtaaaactaaatctgcacatttagttttacccaatc 50067243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 27034378 - 27034343
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  27034378 ttctttctctttttacaccaaaataaagaaggaaaa 27034343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 45690362 - 45690397
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  45690362 ttctttctctttttacaccaaaataaagaaggaaaa 45690397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 47487067 - 47487021
Alignment:
Q  105 ctggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||    
T  47487067 ctggggtaaaactaaatctgcacatttagttttaggaaatctgattc 47487021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 236
Target Start/End: Complemental strand, 47486962 - 47486931
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaagg 236  Q
    ||||||||||||||||||||||||||||||||    
T  47486962 ttctttctctttttacaccaaaataaagaagg 47486931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 45690261 - 45690297
Alignment:
Q  109 ggtaaaactaaatctgcacatttagttttacctaatc 145  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  45690261 ggtaaaactaaatttgcacatttagttttacccaatc 45690297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 10399023 - 10399114
Alignment:
Q  170 tgctcattaatcatctttttatccccagaatttgcttctttctctttttacaccaaaataaagaaggaaaagaaggagattcatagggggag 261  Q
    |||||| || ||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  10399023 tgctcactactcatcattttatccctagaatttgcctctttatctttttacaccaaaataaagaaggaaaaaaaggagattcatatggggag 10399114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 40014112 - 40014166
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaagaaggagattcataggggg 259  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| |||||    
T  40014112 ttctttctctttttacaccaaaataaagaaggaaaggaagaagattcatgggggg 40014166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 3459953 - 3459988
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagttttac 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  3459953 cctggggtaaaactaaatctgcacatttagttttac 3459988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 19401547 - 19401590
Alignment:
Q  102 ttcctggggtaaaactaaatctgcacatttagttttacctaatc 145  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  19401547 ttcctggggtaaaactaaatctgcatatttagttttacccaatc 19401590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 19401656 - 19401691
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19401656 ttcttactctttttacaccaaaataaagaaggaaaa 19401691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 3460059 - 3460119
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaagaaggagattcatagggggagggagtg 267  Q
    |||||||||||||||||||||||| |||||||||| |||  |||||||| ||||||| |||||    
T  3460059 ttctttctctttttacaccaaaat-aagaaggaaaggaacaagattcat-gggggagagagtg 3460119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 19044165 - 19044133
Alignment:
Q  229 aaagaaggaaaagaaggagattcatagggggag 261  Q
    |||||||||||||||||||||| ||||||||||    
T  19044165 aaagaaggaaaagaaggagatttatagggggag 19044133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 16710003 - 16710076
Alignment:
Q  166 tagttgctcattaatcatctttttatccccagaatttgcttctttctctttttacaccaaaataaagaaggaaa 239  Q
    |||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  16710003 tagttgctcactaatcatctttttatccccatattttgcctctttctctttttacaccaaaataaagaaggaaa 16710076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 20149259 - 20149395
Alignment:
Q  102 ttcctggggtaaaactaaatctgcacatttagttttacctaatctgattcnnnnnnnnccaagttagttgctcattaatcatctttttatccccagaatt 201  Q
    |||||| |||||||||||||||||||||||||||||||| |||||| |||        |||||  || |||||| |  ||||| ||||||||||| ||||    
T  20149259 ttcctgaggtaaaactaaatctgcacatttagttttacccaatctggttc--tttattccaagaaagctgctcactgctcatcattttatccccataatt 20149356  T
Q  202 tgcttctttctctttttacaccaaaataaagaaggaaaa 240  Q
     |  |||||||||||||||||||||| ||||||||||||    
T  20149357 ggtctctttctctttttacaccaaaagaaagaaggaaaa 20149395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 22494467 - 22494512
Alignment:
Q  102 ttcctggggtaaaactaaatctgcacatttagttttacctaatctg 147  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  22494467 ttcctggggtaaaactaaatctgcacatttagttttacccaatctg 22494512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 22494575 - 22494610
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  22494575 ttctttctctttttacaccaaaataaagaaggaaaa 22494610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 20149396 - 20149438
Alignment:
Q  229 aaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    |||||||||||||||||||||||||| |||||| |||||||||    
T  20149396 aaagaaggaaaagaaggagattcataaggggagagagtgagga 20149438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 23911917 - 23912071
Alignment:
Q  117 taaatctgcacatttagttttacctaatctgattcnnnnnnnnccaagttagttgctcattaatcatctttttatccccagaatttgcttctttctcttt 216  Q
    |||||||||||| ||||||||||| | |||| |||        |||||  ||||||||| |||||||| |||||||||||||  |  | | |||||||||    
T  23911917 taaatctgcacacttagttttacccattctggttctttttttcccaagaaagttgctcactaatcatcattttatccccagagatgacctttttctcttt 23912016  T
Q  217 ttacaccaaaataaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    |||||||||||||||||||||| | || || |||||||||||||| |||||||||    
T  23912017 ttacaccaaaataaagaaggaacataatgaaattcatagggggagagagtgagga 23912071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 35055020 - 35054971
Alignment:
Q  102 ttcctggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35055020 ttcctggggtaaaactaaatctgcacatttagttttacccaatctgattc 35054971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 35054908 - 35054877
Alignment:
Q  209 ttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||    
T  35054908 ttctctttttacaccaaaataaagaaggaaaa 35054877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 3964415 - 3964298
Alignment:
Q  123 tgcacatttagttttacctaatctgattcnnnnnnnnccaagttagttgctcattaatcatctttttatccccagaatttgcttctttctctttttacac 222  Q
    ||||||||||||||| || ||||| ||||        ||||| ||||| |||| ||||||||||||||||| || |||| || |||||||||||||||||    
T  3964415 tgcacatttagttttgcccaatctaattcttttttccccaagatagtttctcactaatcatctttttatcctcaaaattagcctctttctctttttacac 3964316  T
Q  223 caaaataaagaaggaaaa 240  Q
    ||||||||||||||||||    
T  3964315 caaaataaagaaggaaaa 3964298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 43636765 - 43636722
Alignment:
Q  102 ttcctggggtaaaactaaatctgcacatttagttttacctaatc 145  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  43636765 ttcctggggtaaaactaaatctacacatttagttttacccaatc 43636722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 43636655 - 43636591
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    ||||| |||||||||||||||| |||||||||||| |||| |||||||| ||||||| |||||||||    
T  43636655 ttcttactctttttacaccaaa-taaagaaggaaaggaagaagattcat-gggggagagagtgagga 43636591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 1931778 - 1931746
Alignment:
Q  108 gggtaaaactaaatctgcacatttagttttacc 140  Q
    |||||||||||||||||||||||||||||||||    
T  1931778 gggtaaaactaaatctgcacatttagttttacc 1931746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 33775574 - 33775539
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    |||||||| |||||||||||||||||||||||||||    
T  33775574 ttctttctttttttacaccaaaataaagaaggaaaa 33775539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 43835115 - 43835157
Alignment:
Q  229 aaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    |||||||||||||||| |||||||||||||| | |||||||||    
T  43835115 aaagaaggaaaagaagaagattcatagggggggagagtgagga 43835157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 3964294 - 3964250
Alignment:
Q  224 aaaataaagaaggaaaagaaggagattcatagggggagggagtga 268  Q
    |||| ||| ||||||||||||||||||||| ||||||||| ||||    
T  3964294 aaaaaaaaaaaggaaaagaaggagattcatggggggagggggtga 3964250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 6755368 - 6755505
Alignment:
Q  102 ttcctggggtaaaactaaatctgcacatttagttttacctaatctgattcnnnnnnnnccaagttagttgctcattaatcatctttttatccccagaatt 201  Q
    |||||| |||||||||||||||||||||||||||||| | ||| || |||        |||||  || |||||| || ||||| ||||||||| ||||||    
T  6755368 ttcctgaggtaaaactaaatctgcacatttagttttatccaatttggttctttttcc-ccaagaaagctgctcactactcatcattttatccctagaatt 6755466  T
Q  202 tgcttctttctctttttacaccaaaataaagaaggaaaa 240  Q
     || |||||||||||||||||||||||||||||| ||||    
T  6755467 ggcctctttctctttttacaccaaaataaagaagtaaaa 6755505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 6463410 - 6463262
Alignment:
Q  110 gtaaaactaaatctgcacatttagttttacctaatctgattcnnnnnnnnccaagttagttgctcattaatcatctttttatccccagaatttgcttctt 209  Q
    |||||||||||||||||  |||||||||||| |||||| |||        |||||  ||||||||| || ||||| ||||||||  |||||| || ||||    
T  6463410 gtaaaactaaatctgca--tttagttttacccaatctggttcttttccc-ccaagaaagttgctcactactcatcattttatccatagaattggcctctt 6463314  T
Q  210 tctctttttacaccaaaataaagaag---gaaaagaaggagattcatagggg 258  Q
    ||||||||| ||||||||||||||||    ||||||||||||||||||||||    
T  6463313 tctctttttgcaccaaaataaagaagtaaaaaaagaaggagattcatagggg 6463262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 42384245 - 42384292
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  42384245 cctggggtaaaactaaatctgcacatttagttttacccaatctcattc 42384292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 53826024 - 53825978
Alignment:
Q  105 ctggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||    
T  53826024 ctggggtaaaactaaatctgcacatttagttttacccaatcagattc 53825978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 2323871 - 2323916
Alignment:
Q  106 tggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  2323871 tggggtaaaactaaatctgcacatttagttttacccaatcagattc 2323916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 14995645 - 14995600
Alignment:
Q  101 tttcctggggtaaaactaaatctgcacatttagttttacctaatct 146  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||    
T  14995645 tttcatggggtaaaactaaatctgcacatttagttttacccaatct 14995600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 42384350 - 42384385
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  42384350 ttctttctctttttacaccaaaataaagaaggaaaa 42384385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 42949088 - 42949053
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  42949088 ttctttctctttttacaccaaaataaagaaggaaaa 42949053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 25886328 - 25886286
Alignment:
Q  229 aaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  25886328 aaagaaggaaaagaaggagattcatagggggagagaatgagga 25886286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 2323977 - 2324012
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    |||||||||||||||||||||||||||||| |||||    
T  2323977 ttctttctctttttacaccaaaataaagaaagaaaa 2324012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 6755506 - 6755548
Alignment:
Q  229 aaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    |||||||||||||||||| |||||||||||| | |||||||||    
T  6755506 aaagaaggaaaagaaggatattcatagggggggagagtgagga 6755548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 42949190 - 42949153
Alignment:
Q  108 gggtaaaactaaatctgcacatttagttttacctaatc 145  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  42949190 gggtaaaactaaatctgcacatctagttttacccaatc 42949153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 53825919 - 53825890
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaa 234  Q
    ||||||||||||||||||||||||||||||    
T  53825919 ttctttctctttttacaccaaaataaagaa 53825890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 20378084 - 20378042
Alignment:
Q  109 ggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  20378084 ggtaaaactaaatctgcacatttagttttacccaatctgattc 20378042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 20377983 - 20377948
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  20377983 ttctttctctttttacaccaaaataaagaaggaaaa 20377948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 21613456 - 21613417
Alignment:
Q  108 gggtaaaactaaatctgcacatttagttttacctaatctg 147  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  21613456 gggtaaaactaaatctgcacatttagttttacccaatctg 21613417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 26500793 - 26500840
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||    
T  26500793 cctggggtaaaactaaatatgaacatttagttttacccaatctgattc 26500840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 26500899 - 26500934
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  26500899 ttctttctctttttacaccaaaataaagaaggaaaa 26500934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 26591814 - 26591779
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  26591814 ttctttctctttttacaccaaaataaagaaggaaaa 26591779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 26591920 - 26591873
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||    
T  26591920 cctggggtaaaactaaatatgaacatttagttttacccaatctgattc 26591873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 48219872 - 48219838
Alignment:
Q  104 cctggggtaaaactaaatctgcacatttagtttta 138  Q
    |||||||||||||||||||||||||||||||||||    
T  48219872 cctggggtaaaactaaatctgcacatttagtttta 48219838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 3749968 - 3750015
Alignment:
Q  224 aaaataaagaaggaaaagaaggagattcatagggggagggagtgagga 271  Q
    |||| ||| |||||||||||||||||| |||||||||| |||||||||    
T  3749968 aaaaaaaaaaaggaaaagaaggagatttatagggggagagagtgagga 3750015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Complemental strand, 21613353 - 21613323
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaag 235  Q
    |||||||||||||||||||||||||||||||    
T  21613353 ttctttctctttttacaccaaaataaagaag 21613323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1700 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1700
Description:

Target: scaffold1700; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 882 - 917
Alignment:
Q  205 ttctttctctttttacaccaaaataaagaaggaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  882 ttctttctctttttacaccaaaataaagaaggaaaa 917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1700; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 779 - 824
Alignment:
Q  106 tggggtaaaactaaatctgcacatttagttttacctaatctgattc 151  Q
    |||||||||||||||||||| |||||||||||| | ||| ||||||    
T  779 tggggtaaaactaaatctgcgcatttagttttatccaatttgattc 824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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