View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_33 (Length: 256)
Name: NF15804_low_33
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 2066061 - 2066285
Alignment:
| Q |
15 |
atcatcatgacttggagttatcctagctaaactctgagtttcttcattgattttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaag |
114 |
Q |
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| T |
2066061 |
atcatcatgacttggagttatcctagctaaactctgagtttcttcattgattttgtcttctaataaatctggcatcagaggttgctaaatcagaagaaag |
2066160 |
T |
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| Q |
115 |
tatgcgccgacaaacattaataattgatgaaaatctaagacactgagtgtatcaccatatatactgtgtaccaacatctttgagttcatctcaaaatcca |
214 |
Q |
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| T |
2066161 |
tatgcgccgacaaacattaataattgatgaaaatctaagacactgaatgtatgatcatatatactgtgtaccaacatctttgagttcatctcaaaatcca |
2066260 |
T |
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| Q |
215 |
cattggttagctgaaggtcatatat |
239 |
Q |
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| T |
2066261 |
cattggttagctgaagatcatatat |
2066285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 2806804 - 2806850
Alignment:
| Q |
95 |
gttgctaaatcagaagaaagtatgcgccgacaaacattaataattga |
141 |
Q |
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| T |
2806804 |
gttgctaaatcagaagaaagtaagcgccgacaatcattaataattga |
2806850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 16349583 - 16349657
Alignment:
| Q |
67 |
ttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattga |
141 |
Q |
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| T |
16349583 |
ttgtctcctaacaaatctaacatcagaggttgtcaaattagaataaagtatgtgccgacaatcattaataattga |
16349657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 34899087 - 34898918
Alignment:
| Q |
67 |
ttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattgatg-aaaatctaagacactgagtgta |
165 |
Q |
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|||||| |||||||| || |||||| |||| ||||||| ||||||||| ||||||||| ||| ||||||||| | ||||||| ||||| ||| ||| |
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| T |
34899087 |
ttgtctcctaataaacctaacatcagaagttgttaaatcaaaagaaagtagacgccgacaaccatcaataattgaagcaaaatctgagacatcgagcgta |
34898988 |
T |
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| Q |
166 |
tcaccatatatactgtgtaccaacatctttgagttcatctcaaaatccacattggttagctgaaggtcat |
235 |
Q |
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| T |
34898987 |
cgaccatagatactctctaccactacatttgagttcgtttcaaattccacaatggcgagctgaaggtcat |
34898918 |
T |
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