View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_34 (Length: 255)
Name: NF15804_low_34
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 43987382 - 43987150
Alignment:
| Q |
10 |
catcatcatttcaaatcttttcctcactcctccttccttcc----cccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaac |
105 |
Q |
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| T |
43987382 |
catcatcatttcaaatcttttcctcactcctccttccttccttcccccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaac |
43987283 |
T |
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| Q |
106 |
cgtaatcctccacgtgtccataacgaatcttccccagttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattcc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43987282 |
cgtaatcctccacgtgtccataacgaatcttccccagttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattcc |
43987183 |
T |
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| Q |
206 |
acagtcagcaacaacacacgctcatgtccttct |
238 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43987182 |
acagtcagcaacaacacacgctcatgtccttct |
43987150 |
T |
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