View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15804_low_36 (Length: 238)

Name: NF15804_low_36
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15804_low_36
NF15804_low_36
[»] chr7 (25 HSPs)
chr7 (19-225)||(21836443-21836649)
chr7 (30-116)||(21837334-21837420)
chr7 (100-183)||(17864230-17864311)
chr7 (100-160)||(42780262-42780322)
chr7 (57-154)||(7569387-7569484)
chr7 (57-154)||(7575802-7575899)
chr7 (48-187)||(18971490-18971627)
chr7 (48-117)||(26809672-26809741)
chr7 (48-104)||(1274139-1274194)
chr7 (48-104)||(19063082-19063137)
chr7 (30-153)||(22256418-22256540)
chr7 (50-116)||(5827586-5827651)
chr7 (48-94)||(11826363-11826408)
chr7 (50-116)||(22908740-22908805)
chr7 (48-117)||(22292993-22293061)
chr7 (98-154)||(1634589-1634645)
chr7 (78-117)||(1086596-1086635)
chr7 (78-153)||(9273996-9274071)
chr7 (98-160)||(26745414-26745476)
chr7 (50-94)||(36844111-36844153)
chr7 (109-150)||(39270239-39270280)
chr7 (30-94)||(22233472-22233535)
chr7 (30-94)||(22253204-22253267)
chr7 (109-153)||(26137033-26137077)
chr7 (78-153)||(45288100-45288175)
[»] chr3 (22 HSPs)
chr3 (30-225)||(10962320-10962513)
chr3 (30-225)||(10965829-10966022)
chr3 (33-196)||(282830-282992)
chr3 (78-153)||(30158978-30159053)
chr3 (110-187)||(36532565-36532640)
chr3 (30-116)||(2356654-2356738)
chr3 (57-153)||(9157471-9157567)
chr3 (78-153)||(10883981-10884056)
chr3 (48-94)||(2280712-2280757)
chr3 (30-116)||(49433612-49433696)
chr3 (107-160)||(6766170-6766223)
chr3 (57-94)||(9153961-9153998)
chr3 (30-94)||(10958793-10958856)
chr3 (109-153)||(28329860-28329904)
chr3 (30-94)||(42355250-42355314)
chr3 (78-153)||(19302326-19302400)
chr3 (76-153)||(24128026-24128103)
chr3 (50-116)||(25889344-25889409)
chr3 (50-116)||(44507974-44508039)
chr3 (100-153)||(2777978-2778031)
chr3 (77-153)||(3839753-3839829)
chr3 (109-150)||(16223571-16223612)
[»] chr1 (16 HSPs)
chr1 (50-225)||(22454255-22454427)
chr1 (83-187)||(21914828-21914930)
chr1 (83-187)||(21912045-21912147)
chr1 (100-149)||(16191334-16191383)
chr1 (100-160)||(13495107-13495167)
chr1 (30-116)||(36079729-36079813)
chr1 (98-187)||(28139746-28139834)
chr1 (48-117)||(37640981-37641049)
chr1 (112-186)||(14960933-14961006)
chr1 (78-153)||(45940584-45940659)
chr1 (30-117)||(8996777-8996862)
chr1 (79-153)||(21019330-21019404)
chr1 (50-94)||(22460379-22460421)
chr1 (50-94)||(49147135-49147177)
chr1 (100-160)||(1935653-1935713)
chr1 (109-153)||(49718789-49718833)
[»] chr6 (17 HSPs)
chr6 (79-225)||(12981151-12981296)
chr6 (78-187)||(2770961-2771070)
chr6 (30-182)||(7837094-7837246)
chr6 (48-153)||(14968746-14968850)
chr6 (48-116)||(32821264-32821332)
chr6 (100-160)||(14794674-14794734)
chr6 (100-160)||(15537350-15537410)
chr6 (48-116)||(31261866-31261933)
chr6 (50-117)||(34913001-34913067)
chr6 (100-160)||(22246585-22246645)
chr6 (50-118)||(3827644-3827711)
chr6 (48-116)||(14966079-14966146)
chr6 (78-153)||(21633514-21633589)
chr6 (77-116)||(1190890-1190929)
chr6 (57-116)||(13174420-13174478)
chr6 (57-116)||(13182953-13183011)
chr6 (78-116)||(9953036-9953074)
[»] chr4 (16 HSPs)
chr4 (48-187)||(22090691-22090829)
chr4 (100-183)||(648340-648421)
chr4 (48-116)||(18858937-18859004)
chr4 (107-220)||(19441534-19441647)
chr4 (58-117)||(11107620-11107678)
chr4 (48-94)||(2540959-2541005)
chr4 (48-94)||(7652042-7652088)
chr4 (50-116)||(10246884-10246949)
chr4 (48-102)||(33401197-33401250)
chr4 (100-153)||(3798780-3798833)
chr4 (109-150)||(9054095-9054136)
chr4 (86-151)||(21066668-21066733)
chr4 (100-153)||(33410946-33410999)
chr4 (78-153)||(19826664-19826739)
chr4 (48-104)||(24608572-24608627)
chr4 (109-153)||(49637490-49637534)
[»] chr8 (12 HSPs)
chr8 (30-153)||(22223246-22223367)
chr8 (30-153)||(22229588-22229709)
chr8 (30-116)||(22234411-22234495)
chr8 (48-116)||(5963445-5963512)
chr8 (50-104)||(4862486-4862539)
chr8 (30-94)||(13096072-13096136)
chr8 (50-94)||(20261669-20261712)
chr8 (50-94)||(21048299-21048342)
chr8 (104-153)||(23646240-23646289)
chr8 (109-150)||(29765357-29765398)
chr8 (84-116)||(17724251-17724283)
chr8 (109-153)||(22174884-22174928)
[»] chr2 (16 HSPs)
chr2 (43-153)||(11058993-11059102)
chr2 (48-116)||(9788035-9788101)
chr2 (98-154)||(35079349-35079405)
chr2 (30-152)||(1504232-1504354)
chr2 (33-116)||(2412599-2412681)
chr2 (30-116)||(38873738-38873823)
chr2 (109-150)||(28918278-28918319)
chr2 (107-160)||(29434607-29434660)
chr2 (48-116)||(493248-493314)
chr2 (78-153)||(25873166-25873241)
chr2 (78-153)||(25957325-25957400)
chr2 (50-104)||(41977282-41977335)
chr2 (100-153)||(24237517-24237570)
chr2 (109-150)||(25886157-25886198)
chr2 (30-102)||(490973-491043)
chr2 (109-153)||(9186336-9186380)
[»] chr5 (17 HSPs)
chr5 (30-153)||(28563237-28563359)
chr5 (30-153)||(26550771-26550893)
chr5 (100-187)||(15533359-15533444)
chr5 (50-150)||(30763944-30764043)
chr5 (78-187)||(22938017-22938127)
chr5 (57-153)||(19688713-19688808)
chr5 (30-116)||(40800638-40800723)
chr5 (98-187)||(22038230-22038318)
chr5 (77-153)||(2837651-2837727)
chr5 (19-107)||(36356266-36356353)
chr5 (30-116)||(28566805-28566890)
chr5 (50-116)||(32226385-32226450)
chr5 (30-118)||(26547247-26547334)
chr5 (33-101)||(39657831-39657897)
chr5 (78-117)||(43490792-43490831)
chr5 (107-156)||(18018491-18018540)
chr5 (48-104)||(40885639-40885694)
[»] scaffold0124 (1 HSPs)
scaffold0124 (30-116)||(11691-11778)
[»] scaffold0360 (1 HSPs)
scaffold0360 (50-132)||(1627-1707)
[»] scaffold0298 (2 HSPs)
scaffold0298 (30-116)||(12779-12864)
scaffold0298 (30-116)||(16549-16634)
[»] scaffold1484 (1 HSPs)
scaffold1484 (98-154)||(1301-1357)
[»] scaffold0063 (1 HSPs)
scaffold0063 (100-160)||(8150-8210)
[»] scaffold1832 (1 HSPs)
scaffold1832 (48-116)||(610-677)
[»] scaffold0072 (1 HSPs)
scaffold0072 (109-150)||(38381-38422)
[»] scaffold0050 (1 HSPs)
scaffold0050 (108-160)||(42026-42078)
[»] scaffold0048 (1 HSPs)
scaffold0048 (109-153)||(28236-28280)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 21836443 - 21836649
Alignment:
Q  19 attcgaagtgcctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcaca 118  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21836443 attcaaagtgactctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagattctaaaaatgtgatatgacagaatgtcatcaca 21836542  T
Q  119 accctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataatagctcaccctaccaatgataacctcaaagt 218  Q
    | || |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||    
T  21836543 atcccaaacttgaattgttacttatccttaaggaacaaacttgttaaatgaaaaatgacactaaaataatagttcaccctaccaatgataaactcaaagt 21836642  T
Q  219 tcttctc 225  Q
    || ||||    
T  21836643 tcatctc 21836649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 21837334 - 21837420
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  21837334 ctctaaattaaacaatatactaataataatagactaaaatcttaattaaaaaagactctataaatgtgatatgacagagtgtcatca 21837420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 17864230 - 17864311
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaa 183  Q
    |||||||| |||||||||||||| ||||||| || |||||||||||||||||||| ||||  | ||||||||||| ||||||||    
T  17864230 atgacagaatgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaaccaact--taaaatgaaaaatcacagtaaa 17864311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 42780262 - 42780322
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  42780262 atgacatagtgtcatcacaaccccaaacttgcattgttacttgtcctcaaggaaccaactt 42780322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 7569484 - 7569387
Alignment:
Q  57 aatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaac 154  Q
    |||||| ||||||||| |||||||  ||||||||||||  | |||||| || |||||||| ||||| ||||||| || ||||||| ||||||||||||    
T  7569484 aatagattaaaaacttaattaaaagtgactctaaaaatagggtatgactgactgtcatcaaaaccccaaacttgcatcgttacttttcctcaaggaac 7569387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 7575899 - 7575802
Alignment:
Q  57 aatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaac 154  Q
    |||||| ||||||||| |||||||  ||||||||||||  | |||||| || |||||||| ||||| ||||||| || ||||||| ||||||||||||    
T  7575899 aatagattaaaaacttaattaaaagtgactctaaaaatagggtatgactgactgtcatcaaaaccccaaacttgcatcgttacttttcctcaaggaac 7575802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 18971490 - 18971627
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcct 146  Q
    |||||||| ||| |||||||| ||  |||||||  ||||| |||||| ||| |||||| || | |||||||||||| ||| |||||  ||||||||| ||    
T  18971490 actaataaaaattgactaaaatctcaattaaaagtgactcaaaaaatagtg-tatgactgactatcatcacaaccccaaatttgaaccgttacttgtact 18971588  T
Q  147 caaggaacaaacttgttaaatgaaaaatgacagtaaaataa 187  Q
    |||||||| ||||  | ||||||||||| ||||||||||||    
T  18971589 caaggaaccaact--taaaatgaaaaataacagtaaaataa 18971627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 26809672 - 26809741
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcac 117  Q
    |||||||| |||||| | ||||||| ||||||| ||||||||||||| ||||||||| || |||||||||    
T  26809672 actaataaaaatagaattaaaacttaattaaaatagactctaaaaatatgatatgacggactgtcatcac 26809741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 1274194 - 1274139
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgac 104  Q
    |||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  1274194 actaataaaaataaactaaaaacttaattaaaaa-gactctaaaaatgtgatatgac 1274139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 19063137 - 19063082
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgac 104  Q
    |||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  19063137 actaataaaaataaactaaaaacttaattaaaaa-gactctaaaaatgtgatatgac 19063082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 22256540 - 22256418
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaact 128  Q
    |||||||| ||| | || |||||||| | ||||||||||| || ||| ||||||||||||||||| |||  ||||| |  |||||||||||||| |||||    
T  22256540 ctctaaattaaatactaaactaataaaactagactaaaaattt-atttaaaaagactctaaaaatagtgc-atgactggctgtcatcacaaccccaaact 22256443  T
Q  129 tgaattgttacttgtcctcaaggaa 153  Q
    |||| | || |||||||||||||||    
T  22256442 tgaactattccttgtcctcaaggaa 22256418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 5827586 - 5827651
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||| | |||| ||||||||| ||||||| ||||||||||||||||||||||| || ||||||||    
T  5827586 taataaaattagaataaaaacttaattaaaa-agactctaaaaatgtgatatgacggactgtcatca 5827651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 11826363 - 11826408
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  11826363 actaataa-aatagactaaaaacttaattaaaaaagactctaaaaat 11826408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 22908805 - 22908740
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    ||||||||||||||||||||||  | |||||| |||||||||||||| |||||||| | ||||||||    
T  22908805 taataataatagactaaaaactaaactaaaaa-gactctaaaaatgtaatatgacatactgtcatca 22908740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 22292993 - 22293061
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcac 117  Q
    |||||||| |||||| | ||||||| ||||||| ||||||||||||||| |||||| ||| |||||||||    
T  22292993 actaataaaaatagaattaaaacttaattaaaa-agactctaaaaatgtaatatgatagactgtcatcac 22293061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 1634589 - 1634645
Alignment:
Q  98 atatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaac 154  Q
    |||||||  ||||||||||| |||| ||||||| || ||||||||||||||||||||    
T  1634589 atatgacctagtgtcatcactaccccaaacttgcatcgttacttgtcctcaaggaac 1634645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 1086596 - 1086635
Alignment:
Q  78 aaaaagactctaaaaatgtgatatgacagagtgtcatcac 117  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  1086596 aaaaagactctgaaaatgtgatatgatagagtgtcatcac 1086635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 9273996 - 9274071
Alignment:
Q  78 aaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||| | ||||||||| ||||| || |||||||||||||| ||| |||||   || |||||||||||||||    
T  9273996 aaaaagactttgaaaatgtgaaatgacggactgtcatcacaaccccaaaattgaaccattccttgtcctcaaggaa 9274071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 26745414 - 26745476
Alignment:
Q  98 atatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||| ||||| ||||||||| ||||  |||| || ||||||||||||||||| ||||||||    
T  26745414 atatgatagagtatcatcacaatcctattcttgcatcgttacttgtcctcaaggtacaaactt 26745476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 36844111 - 36844153
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||    
T  36844111 taataataatagactaaaaacttaatt--aaaagactctaaaaat 36844153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 39270280 - 39270239
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaag 150  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  39270280 tgtcatcacaaccccaaacttaaattgttgcttgtcctcaag 39270239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 22233472 - 22233535
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| ||| | || |||||||| | |||||||||||||| ||| |||||||||||||||||    
T  22233472 ctctaaattaaatactaaactaataaaactagactaaaaactt-atttaaaaagactctaaaaat 22233535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 22253267 - 22253204
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| ||| | || |||||||| | |||||||||||||| ||| |||||||||||||||||    
T  22253267 ctctaaattaaatactaaactaataaaactagactaaaaactt-atttaaaaagactctaaaaat 22253204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 26137033 - 26137077
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||| |||||||||  ||| |||||||||||||||    
T  26137033 tgtcatcacaaccccaaacttgaaccgttccttgtcctcaaggaa 26137077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 45288100 - 45288175
Alignment:
Q  78 aaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||| |||| ||||| || |||||||||||| | |||||||||   || |||||||||||||||    
T  45288100 aaaaagactctaaaaatagtga-atgactgactgtcatcacaactccaaacttgaaccattccttgtcctcaaggaa 45288175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 10962513 - 10962320
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaact 128  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| |||||||||||| |||| ||||| || || ||||||||||| ||||     
T  10962513 ctctaaattaaatagtaaactaataaaaatagactaaaaactt-attaaaaatgactctaaaaatagtga-atgactgactgccatcacaaccccaaaca 10962416  T
Q  129 tgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataatagctcaccctaccaatgataacctcaaagttcttctc 225  Q
    | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||||||| ||||||||||| ||||    
T  10962415 taaactgttacttgtcctcaaggaacaaacttgttgaatgaaaaatgacagtaaaataacagctca-ccaaccaatgatatcctcaaagttcatctc 10962320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 10966022 - 10965829
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaact 128  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| |||||||||||| |||| ||||| || || ||||||||||| ||||     
T  10966022 ctctaaattaaatagtaaactaataaaaatagactaaaaactt-attaaaaatgactctaaaaatagtga-atgactgactgccatcacaaccccaaaca 10965925  T
Q  129 tgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataatagctcaccctaccaatgataacctcaaagttcttctc 225  Q
    | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||||||| ||||||||||| ||||    
T  10965924 taaactgttacttgtcctcaaggaacaaacttgttgaatgaaaaatgacagtaaaataacagctca-ccaaccaatgatatcctcaaagttcatctc 10965829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 282830 - 282992
Alignment:
Q  33 taaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttga 131  Q
    ||||| ||| |||| |||||||| ||||||| |||||||| |||||||  ||||| |||||| ||| |||||  || | |||||||||||||||||||||    
T  282830 taaattaaatattaaactaataaaaatagaccaaaaacttaattaaaagtgactcaaaaaatagtg-tatgattgactttcatcacaaccctaaacttga 282928  T
Q  132 attgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataatagctcacc 196  Q
    | ||||||||||||| || || |||| |||||||||||||||| ||| |||||||| ||||||||    
T  282929 actgttacttgtccttaa-gagcaaatttgttaaatgaaaaattacaataaaataacagctcacc 282992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 30158978 - 30159053
Alignment:
Q  78 aaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||||||||||||| || | |||||||||||| ||||||||||  || |||||||||||||||    
T  30158978 aaaaagactctaaaaatgtgatatgacggactatcatcacaaccccaaacttgaatcattccttgtcctcaaggaa 30159053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 36532640 - 36532565
Alignment:
Q  110 gtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataa 187  Q
    ||||||||||||| ||||||| || |||||||||||||||||||| ||||  | ||||||||||| ||||||||||||    
T  36532640 gtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaaccaact--taaaatgaaaaatcacagtaaaataa 36532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 2356738 - 2356654
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||| || ||||||||    
T  2356738 ctctaaatgaaatactaaactaataa-aatagactaaaaacttaattaaaaa-gacgctaaaaatgtgatatgacggactgtcatca 2356654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 9157567 - 9157471
Alignment:
Q  57 aatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||||| ||| ||||||||||||||||| |||  ||||| || |||||||||||||| |||||||||   ||  ||||||||||||||    
T  9157567 aatagactaaaaacttaatttaaaaagactctaaaaatagtg-catgactgactgtcatcacaaccccaaacttgaaccattctttgtcctcaaggaa 9157471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 10884056 - 10883981
Alignment:
Q  78 aaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||| |||||||||  ||| |||||||||||||||    
T  10884056 aaaaagactctaaaaatagtga-atgactgactgtcatcacaaccccaaacttgaaccgttccttgtcctcaaggaa 10883981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 2280712 - 2280757
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  2280712 actaataa-aatagactaaaaacttaattaaaaaagactctaaaaat 2280757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 49433696 - 49433612
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| || || |||||||||||||||| || ||||||||    
T  49433696 ctctaaatgaaatactagactaataa-aatagactaaaaacttaattaaaaa-gattccaaaaatgtgatatgacggactgtcatca 49433612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 6766170 - 6766223
Alignment:
Q  107 agtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||||||||||||| ||||||| ||  |||||||||||||||||| ||||||    
T  6766170 agtgtcatcacaaccccaaacttgcatcattacttgtcctcaaggaataaactt 6766223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 9153998 - 9153961
Alignment:
Q  57 aatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||||||||||| |||||||||||||||||||||    
T  9153998 aatagactaaaaacttaattaaaaaagactctaaaaat 9153961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 10958856 - 10958793
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| ||||||||||||    
T  10958856 ctctaaattaaatagtaaactaataaaaatagactaaaaactt-attaaaaatgactctaaaaat 10958793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 28329904 - 28329860
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||| ||||||||||| || |||||||||||||||    
T  28329904 tgtcatcacaaccccaaacttgaattattccttgtcctcaaggaa 28329860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 42355250 - 42355314
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| ||| |||| |||||||| | ||||||||||||||  |||||||| |||||||||||    
T  42355250 ctctaaattaaatattaaactaataaaattagactaaaaacttatttaaaaaaaactctaaaaat 42355314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 19302326 - 19302400
Alignment:
Q  78 aaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||| ||| ||||| || | ||||||| |||| ||||||||| | || |||||||||||||||    
T  19302326 aaaaagactctaaaaatatgaaatgacggactatcatcac-accccaaacttgaactattccttgtcctcaaggaa 19302400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 24128103 - 24128026
Alignment:
Q  76 taaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||| |||| | || ||||| || |||||||||||||| ||||||||| | || |||||||||||||||    
T  24128103 taaaaaagactctagaaatagcga-atgacggactgtcatcacaaccccaaacttgaactattccttgtcctcaaggaa 24128026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 25889344 - 25889409
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||| | ||||||| ||||||| ||||||||||||| ||||||||| || ||||||||    
T  25889344 taataatattagaattaaaacttaattaaaa-agactctaaaaatatgatatgacggactgtcatca 25889409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 44508039 - 44507974
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||| | |||| ||||||||| |||||||| ||||||||| |||||||||||| || ||||||||    
T  44508039 taataaaactagaataaaaacttaattaaaaa-gactctaaatatgtgatatgacggactgtcatca 44507974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 2778031 - 2777978
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||| || |||||||||||||| ||||||||| | || |||||||||||||||    
T  2778031 atgacggactgtcatcacaaccccaaacttgaactattccttgtcctcaaggaa 2777978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 3839829 - 3839753
Alignment:
Q  77 aaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||| ||||||||||| |||| ||||| || |||||||||||||| |||||||||   || |||||||||||||||    
T  3839829 aaaaaaaactctaaaaatagtga-atgactgactgtcatcacaaccccaaacttgaacaattccttgtcctcaaggaa 3839753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 16223571 - 16223612
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaag 150  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  16223571 tgtcatcacaaccccaaacttaaattgttgcttgtcctcaag 16223612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 22454255 - 22454427
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctca 148  Q
    ||||||||||||||||||||||| |||||||  || ||||||||| |||| ||||| || |||||||||||||  ||||||||| ||||||||| |||||    
T  22454255 taataataatagactaaaaacttaattaaaa--gattctaaaaatagtga-atgactgactgtcatcacaaccgcaaacttgaaatgttacttgacctca 22454351  T
Q  149 aggaacaaacttgttaaatgaaaaatgacagtaaaataatagctcaccctaccaatgataacctcaaagttcttctc 225  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||| |||||||||| ||||    
T  22454352 aggaacaaacttgttaaatgaaaaatgacagtaaaataacagctta-ccaaccaatgataatctcaaagttcatctc 22454427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 21914828 - 21914930
Alignment:
Q  83 gactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagta 181  Q
    |||||||||||| ||| |||||| || |||||||||||||| |||||||||  |||||||||||||||||||| ||||  | ||||||||||| ||||||    
T  21914828 gactctaaaaatagtg-tatgactgattgtcatcacaaccccaaacttgaaccgttacttgtcctcaaggaaccaact--taaaatgaaaaataacagta 21914924  T
Q  182 aaataa 187  Q
    ||||||    
T  21914925 aaataa 21914930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 21912045 - 21912147
Alignment:
Q  83 gactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagta 181  Q
    |||||||||||| ||| |||||| || |||||||||||||| |||||||||  |||| ||||||||||||||| ||||  | ||||||||||| ||||||    
T  21912045 gactctaaaaatagtg-tatgactgattgtcatcacaaccccaaacttgaaccgttatttgtcctcaaggaaccaact--taaaatgaaaaataacagta 21912141  T
Q  182 aaataa 187  Q
    ||||||    
T  21912142 aaataa 21912147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 16191334 - 16191383
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaa 149  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||    
T  16191334 atgacagagtgtcatcacaaccctaaacttggatcgttacttgtcctcaa 16191383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 13495167 - 13495107
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||||| |||||||||||||| ||||||| || |||||||||||||||||||| |||||    
T  13495167 atgacagaatgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaaccaactt 13495107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 36079813 - 36079729
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||| || ||||||||    
T  36079813 ctctaaatgaaatactaaactaataa-aatagactaaaaacttaattaaaaa-gactccaaaaatgtgatatgacggactgtcatca 36079729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 28139746 - 28139834
Alignment:
Q  98 atatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataa 187  Q
    |||||||  |||||||||||||||| ||||||| || ||||||||||||||||||||  |||| | ||||||||| | |||| |||||||    
T  28139746 atatgacctagtgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaacttactt-taaaatgaaaattaacagaaaaataa 28139834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 37641049 - 37640981
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcac 117  Q
    |||||||| |||||| | ||||||| |||||||| |||||||||||||||||||||| || |||||||||    
T  37641049 actaataaaaatagaattaaaacttaattaaaaa-gactctaaaaatgtgatatgacggactgtcatcac 37640981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 14961006 - 14960933
Alignment:
Q  112 catcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaata 186  Q
    ||||||||||| ||||||| || |||||||| ||||||||||||||| | || |||||||| | |||||||||||    
T  14961006 catcacaaccccaaacttgtatcgttacttgccctcaaggaacaaacatatt-aatgaaaattaacagtaaaata 14960933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 45940659 - 45940584
Alignment:
Q  78 aaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||| | || ||||| || |||||||||||||| ||||||||| | || |||||||||||||||    
T  45940659 aaaaagactctaaaaatagcga-atgactgactgtcatcacaaccccaaacttgaactattccttgtcctcaaggaa 45940584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 8996777 - 8996862
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcac 117  Q
    |||||||| ||| | || |||||||| |||||| ||||||||| | |||||| |||| ||||||||||||||||| || |||||||||    
T  8996777 ctctaaatgaaatactaaactaataa-aatagagtaaaaacttaaataaaaa-gactttaaaaatgtgatatgacggactgtcatcac 8996862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 21019330 - 21019404
Alignment:
Q  79 aaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||||| | || ||||| || ||||||||||||||||||||||||   || |||||||||||||||    
T  21019330 aaaagactctaaaaatagcga-atgactgactgtcatcacaaccctaaacttgaaccattccttgtcctcaaggaa 21019404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 22460379 - 22460421
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||    
T  22460379 taataataatagactaaaaacttaatt--aaaagactctaaaaat 22460421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 49147177 - 49147135
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||    
T  49147177 taataataatagactaaaaacttaatt--aaaagactctaaaaat 49147135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 1935713 - 1935653
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||||||  ||||| |||||| ||||||| ||  ||||||||||||||||||| |||||    
T  1935713 atgacagagcatcatcccaaccccaaacttgcatcattacttgtcctcaaggaaccaactt 1935653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 49718833 - 49718789
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||| ||||||||| | || |||||||||||||||    
T  49718833 tgtcatcacaaccccaaacttgaactattccttgtcctcaaggaa 49718789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 12981151 - 12981296
Alignment:
Q  79 aaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgac 177  Q
    |||||||||||||||| |||| ||||| || |||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  12981151 aaaagactctaaaaatagtga-atgactgactgtcatcacaaccccagacttaaaatgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgac 12981249  T
Q  178 agtaaaataatagctcaccctaccaatgataacctcaaagttcttctc 225  Q
    |||||||||| |||| | || ||||||||||| |||||||||| ||||    
T  12981250 agtaaaataacagctta-ccaaccaatgataatctcaaagttcatctc 12981296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 2771070 - 2770961
Alignment:
Q  78 aaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgac 177  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||| | ||||| ||||| |||||||||||||||||||| |||| |||     
T  2771070 aaaaagactataaaaatatgatatgacagactgtcatcacaaccttaaacttgaactattactcgtcctaaaggaacaaacttgttaaataaaaagtgaa 2770971  T
Q  178 agtaaaataa 187  Q
    || |||||||    
T  2770970 agcaaaataa 2770961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 7837246 - 7837094
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaact 128  Q
    |||||||| ||| | || |||||||| ||||||| ||||||||  ||||| | |||| ||||||| ||| |||||| || |||||||||||||  |||||    
T  7837246 ctctaaattaaatactaaactaataaaaatagaccaaaaacttatttaaatatgactataaaaatagtg-tatgactgactgtcatcacaacctcaaact 7837148  T
Q  129 tgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaa 182  Q
    | || ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  7837147 taaactgttacttgtcctcaagaaacaaacttgttaaataaaaaatgacagtaa 7837094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 14968850 - 14968746
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctc 147  Q
    |||||||| |||||| | ||||||| |||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||  || |||||||||    
T  14968850 actaataaaaatagaattaaaacttaattaaaaa-gactctaaaaatgtgatatgacggactgtcatcacaaccccaaacttgaatcattccttgtcctc 14968752  T
Q  148 aaggaa 153  Q
    ||||||    
T  14968751 aaggaa 14968746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 32821332 - 32821264
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||| || ||||||||    
T  32821332 actaataaaaatagaattaaaacttaattaaaaaagactctaaaaatgtgatatgacggactgtcatca 32821264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 14794734 - 14794674
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||||| |||||||||||||| ||||||| || |||||||||||||||||||| |||||    
T  14794734 atgacagaatgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaaccaactt 14794674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 15537410 - 15537350
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||    
T  15537410 atgacagaatgtcatcacaaccctaaacttgcatcgctacttgtcctcaaggaaccaactt 15537350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 31261933 - 31261866
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||| || ||||||||    
T  31261933 actaataaaaatagacttaaaacttaattaaaaa-gactctaaaaatgtgatatgacggactgtcatca 31261866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 34913067 - 34913001
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcac 117  Q
    ||||||||||||||||||||||| ||| ||||  ||||||||||||||||||||| || |||||||||    
T  34913067 taataataatagactaaaaacttaatt-aaaagtactctaaaaatgtgatatgacggattgtcatcac 34913001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 22246645 - 22246585
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||||| |||||| ||||||| ||||||| || |||||||||||||||||||| |||||    
T  22246645 atgacagaatgtcatgacaaccccaaacttgcatcgttacttgtcctcaaggaaccaactt 22246585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 3827644 - 3827711
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcaca 118  Q
    |||||| | |||| ||||||||| ||||||| |||||||||| |||||||||||| || ||||||||||    
T  3827644 taataaaactagaataaaaacttaattaaaa-agactctaaatatgtgatatgacggactgtcatcaca 3827711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 14966146 - 14966079
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||||| | ||||||| |||||||| |||||||||||| ||||||||| || ||||||||    
T  14966146 actaataaaaatagaattaaaacttaattaaaaa-gactctaaaaatatgatatgacggactgtcatca 14966079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 21633589 - 21633514
Alignment:
Q  78 aaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||| ||| |||||| || |||||||||||||  ||||||||||  || |||||||||||||||    
T  21633589 aaaaagactctaaaaatagtg-tatgactgactgtcatcacaacctcaaacttgaatcattccttgtcctcaaggaa 21633514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 1190890 - 1190929
Alignment:
Q  77 aaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  1190890 aaaaaatactctaaaaatgtgatatgatagagtgtcatca 1190929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 13174420 - 13174478
Alignment:
Q  57 aatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    ||||||||||||| || |||||||| ||||| |||||||||||||||| || ||||||||    
T  13174420 aatagactaaaaatttaattaaaaa-gactcaaaaaatgtgatatgacggactgtcatca 13174478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 13182953 - 13183011
Alignment:
Q  57 aatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    ||||||||||||| || |||||||| ||||| |||||||||||||||| || ||||||||    
T  13182953 aatagactaaaaaattaattaaaaa-gactcaaaaaatgtgatatgacggactgtcatca 13183011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 9953074 - 9953036
Alignment:
Q  78 aaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  9953074 aaaaagactctaaaaatgtgaaatgacagactgtcatca 9953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 22090691 - 22090829
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctc 147  Q
    |||||||| |||||| | ||||||| ||||||| |||||||| |||| ||||||||| || ||||||||||| || |||||||||||||| |||||||||    
T  22090691 actaataaaaatagaattaaaacttaattaaaa-agactctagaaatatgatatgacggattgtcatcacaatcccaaacttgaattgttgcttgtcctc 22090789  T
Q  148 aaggaacaaacttgttaaatgaaaaatgacagtaaaataa 187  Q
    ||| |||||||||| | ||| |||||||||||||||||||    
T  22090790 aagaaacaaacttgattaataaaaaatgacagtaaaataa 22090829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 648340 - 648421
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaa 183  Q
    |||||||| |||||||||||||| ||||||| || |||||||||||||||||||| ||||  | ||||||||||| ||||||||    
T  648340 atgacagaatgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaaccaact--taaaatgaaaaatcacagtaaa 648421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 18859004 - 18858937
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||| || ||||||||    
T  18859004 actaataaaaatagactgaaaactt-atttaaaaagactctaaaaatgtgatatgacggactgtcatca 18858937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 19441534 - 19441647
Alignment:
Q  107 agtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataat-agctcaccctaccaatg 205  Q
    |||||||||||||||  ||||||| || |||||||||| | || ||||||| ||||| |||||||||||||| | |||| || |  | |||||| |||||    
T  19441534 agtgtcatcacaacctcaaacttgtatcgttacttgtcattaatgaacaaagttgtt-aatgaaaaatgacaatcaaatgatcaaattaccctatcaatg 19441632  T
Q  206 ataacctcaaagttc 220  Q
    ||||||| |||||||    
T  19441633 ataaccttaaagttc 19441647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 11107678 - 11107620
Alignment:
Q  58 atagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcac 117  Q
    ||||| ||||||||| |||||||| |||||||||||| |||||||| | |||||||||||    
T  11107678 atagattaaaaacttaattaaaaa-gactctaaaaatatgatatgataaagtgtcatcac 11107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 2541005 - 2540959
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| ||||||||||| |||| |||||||| ||||||||||||    
T  2541005 actaataaaaatagactaaatacttaattaaaaatgactctaaaaat 2540959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 7652042 - 7652088
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| |||||||||||||||| |||||||  ||||||||||||    
T  7652042 actaataaaaatagactaaaaacttaattaaaagtgactctaaaaat 7652088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 10246949 - 10246884
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||| | |||| ||||||||| ||| |||| |||||||||||||||||||||| || ||||||||    
T  10246949 taataaaattagaataaaaacttaattgaaaa-gactctaaaaatgtgatatgacggactgtcatca 10246884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 33401197 - 33401250
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatg 102  Q
    |||||||| |||||||| |||| || ||||||| |||||||||||||||||||||    
T  33401197 actaataaaaatagacttaaaatttaattaaaa-agactctaaaaatgtgatatg 33401250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 3798780 - 3798833
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||| || |||||||||||||| ||||||||||  || |||||||||||||||    
T  3798780 atgactgactgtcatcacaaccccaaacttgaatcattccttgtcctcaaggaa 3798833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 9054095 - 9054136
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaag 150  Q
    |||||||||||||| |||||| |||||| |||||||||||||    
T  9054095 tgtcatcacaaccccaaacttaaattgtcacttgtcctcaag 9054136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 21066733 - 21066668
Alignment:
Q  86 tctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaagg 151  Q
    ||||||||| | |||| || ||||||||| ||||||||||| ||||| |||| ||||| |||||||    
T  21066733 tctaaaaatattatataactgagtgtcataacaaccctaaatttgaactgttgcttgttctcaagg 21066668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 33410946 - 33410999
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||| || |||||||||||||| ||||||||||  || |||||||||||||||    
T  33410946 atgactgactgtcatcacaaccccaaacttgaatcattccttgtcctcaaggaa 33410999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 19826739 - 19826664
Alignment:
Q  78 aaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||| | || ||||| || |||||||||||||| |||||||||   || |||||||||||||||    
T  19826739 aaaaagactctaaaaatagcga-atgactgactgtcatcacaaccccaaacttgaaccattccttgtcctcaaggaa 19826664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 24608572 - 24608627
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgac 104  Q
    ||||| || ||||||  |||||||| ||||||| |||||||||||||||||||||||    
T  24608572 actaaaaaaaatagaacaaaaacttaattaaaa-agactctaaaaatgtgatatgac 24608627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 49637490 - 49637534
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||| ||||||||| | || |||||||||||||||    
T  49637490 tgtcatcacaaccccaaacttgaactattccttgtcctcaaggaa 49637534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 22223246 - 22223367
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaactt 129  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  22223246 ctctaaatgaaatactaaactaataa-aatagactaaaaacttaattaaaaa-gactcaaaaaatgtgatatgacagactgtcatcacaaccccaaactt 22223343  T
Q  130 gaattgttacttgtcctcaaggaa 153  Q
    ||||  || |||||||||||||||    
T  22223344 gaatcattccttgtcctcaaggaa 22223367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 22229588 - 22229709
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaactt 129  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  22229588 ctctaaatgaaatactaaactaataa-aatagactaaaaacttaattaaaaa-gactcaaaaaatgtgatatgacagactgtcatcacaaccccaaactt 22229685  T
Q  130 gaattgttacttgtcctcaaggaa 153  Q
    ||||  || |||||||||||||||    
T  22229686 gaatcattccttgtcctcaaggaa 22229709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 22234411 - 22234495
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||    
T  22234411 ctctaaatgaaatactaaactaataa-aatagactaaaaacttaattaaaaa-gactcaaaaaatgtgatatgacagactgtcatca 22234495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 5963512 - 5963445
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||||| | ||||||| |||||||| |||||||||||||||||||||| || ||||||||    
T  5963512 actaataaaaatagaattaaaacttaattaaaaa-gactctaaaaatgtgatatgacggactgtcatca 5963445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 4862486 - 4862539
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgac 104  Q
    ||||||||||||||||||||||  | ||||| |||||||||||||||||||||||    
T  4862486 taataataatagactaaaaactaaactaaaa-agactctaaaaatgtgatatgac 4862539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 13096136 - 13096072
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    |||||||| ||| | || |||||||| |||||||| ||||||| ||||||||| |||||||||||    
T  13096136 ctctaaattaaatactaaactaataaaaatagacttaaaacttaattaaaaaaaactctaaaaat 13096072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 20261712 - 20261669
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  20261712 taataataatagactaaaaacttaatt-aaaaagactctaaaaat 20261669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 21048342 - 21048299
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaat 94  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  21048342 taataataatagactaaaaacttaatt-aaaaagactctaaaaat 21048299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 23646289 - 23646240
Alignment:
Q  104 cagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||| ||||||||||||||||||||||||   || |||||||||||||||    
T  23646289 cagaatgtcatcacaaccctaaacttgaaccattccttgtcctcaaggaa 23646240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 29765398 - 29765357
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaag 150  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  29765398 tgtcatcacaaccccaaacttaaattgttgcttgtcctcaag 29765357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 17724251 - 17724283
Alignment:
Q  84 actctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||||||||||||||||| ||||||||||    
T  17724251 actctaaaaatgtgatatgacaaagtgtcatca 17724283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 22174884 - 22174928
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||| ||||||||||| || |||||||| ||||||    
T  22174884 tgtcatcacaaccccaaacttgaattattccttgtccttaaggaa 22174928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 11059102 - 11058993
Alignment:
Q  43 attatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttg 142  Q
    |||| |||||||| |||||| | ||||||| |||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||  || ||||    
T  11059102 attaaactaataaaaatagaattaaaacttaattaaaaa-gactctaaaaatgtgatatgacggactgtcatcacaaccccaaacttgaatcattccttg 11059004  T
Q  143 tcctcaaggaa 153  Q
    |||||||||||    
T  11059003 tcctcaaggaa 11058993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 9788035 - 9788101
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||||||||||||||| ||||||| |||||||||||||||||||| || || ||||||||    
T  9788035 actaataa-aatagactaaaaacttaattaaaa-agactctaaaaatgtgatataacggattgtcatca 9788101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 35079405 - 35079349
Alignment:
Q  98 atatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaac 154  Q
    |||||||  |||||||||||||||| ||||||| || ||||||||||||||||||||    
T  35079405 atatgacctagtgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaac 35079349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 1504232 - 1504354
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaact 128  Q
    |||||||| ||| | || |||||||| | ||||||||||||||  | |||||| ||| ||||||| |||| ||||| || |||||||||||||| |||||    
T  1504232 ctctaaattaaatactaaactaataaaactagactaaaaacttattaaaaaaaaactttaaaaatagtga-atgactgactgtcatcacaaccccaaact 1504330  T
Q  129 tgaattgttacttgtcctcaagga 152  Q
    ||||   || ||||||||||||||    
T  1504331 tgaaccattccttgtcctcaagga 1504354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 2412681 - 2412599
Alignment:
Q  33 taaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    ||||| ||| |||| |||||||| |||||| | ||||||| |||||||| |||||||||||||||||||||  || ||||||||    
T  2412681 taaattaaatattaaactaataaaaatagaattaaaacttaattaaaaa-gactctaaaaatgtgatatgatggactgtcatca 2412599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 38873738 - 38873823
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| |||| |||||||| |||| ||||||||||| ||| |||||||||||||| |||| ||| ||||||  |||||||    
T  38873738 ctctaaattaaatattagactaataaaaataaactaaaaacttaatt-aaaaagactctaaatatgtaataggacagaccgtcatca 38873823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 28918278 - 28918319
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaag 150  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  28918278 tgtcatcacaaccctaaacttaaattgttgcttgtcctcaag 28918319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 29434607 - 29434660
Alignment:
Q  107 agtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||||||||||||| ||||||| ||  |||||||||||||||||| ||||||    
T  29434607 agtgtcatcacaaccccaaacttgcatcattacttgtcctcaaggaataaactt 29434660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 493248 - 493314
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||| ||||||||||| |||||||| ||||| |||||||||||||||| || ||||||||    
T  493248 actaataa-aatatactaaaaacttaattaaaaa-gactccaaaaatgtgatatgacggactgtcatca 493314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 25873241 - 25873166
Alignment:
Q  78 aaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||| |||||||||   || |||||||||||||||    
T  25873241 aaaaagactctaaaaatagtga-atgactgactgtcatcacaaccccaaacttgaaccattccttgtcctcaaggaa 25873166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 25957325 - 25957400
Alignment:
Q  78 aaaaagactctaaaaat-gtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||||||||||||||| | || ||||| || |||||||||||||| ||||||||| | || |||||||||||||||    
T  25957325 aaaaagactctaaaaatagcga-atgacggactgtcatcacaaccccaaacttgaactattccttgtcctcaaggaa 25957400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 41977335 - 41977282
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgac 104  Q
    ||||||||||||||||||||||  | |||||| |||||||||| |||||||||||    
T  41977335 taataataatagactaaaaactaaactaaaaa-gactctaaaattgtgatatgac 41977282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 24237570 - 24237517
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    ||||| || |||||||||||||| ||||||||| | || |||||||||||||||    
T  24237570 atgacggactgtcatcacaaccccaaacttgaactattccttgtcctcaaggaa 24237517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 25886198 - 25886157
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaag 150  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  25886198 tgtcatcacaaccccaaacttaaattgttgcttgtcctcaag 25886157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 490973 - 491043
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatg 102  Q
    |||||||| ||| | || |||||||| |||| ||||||||||| |||||||| ||||| ||||||||||||||    
T  490973 ctctaaatgaaatactaaactaataa-aatatactaaaaacttaattaaaaa-gactccaaaaatgtgatatg 491043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 9186336 - 9186380
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||| ||||||||| | || |||||||||||||||    
T  9186336 tgtcatcacaaccccaaacttgaactattccttgtcctcaaggaa 9186380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 28563237 - 28563359
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaactt 129  Q
    |||||||| ||| | || |||||||| |||||| | |||| || ||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||    
T  28563237 ctctaaattaaatactaaactaataaaaatagattgaaaattt-atttaaaaagactctaaaaatgtgatatgacggactgtcatcacaaccccaaactt 28563335  T
Q  130 gaattgttacttgtcctcaaggaa 153  Q
    ||| | || |||||||||||||||    
T  28563336 gaactattccttgtcctcaaggaa 28563359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 26550893 - 26550771
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaactt 129  Q
    |||||||| ||| | || |||||||| |||||| | |||| || ||| ||||||||| ||||||||||||||||| || |||||||||||||| ||||||    
T  26550893 ctctaaattaaatactaaactaataaaaatagattgaaaattt-atttaaaaagactttaaaaatgtgatatgacggactgtcatcacaaccccaaactt 26550795  T
Q  130 gaattgttacttgtcctcaaggaa 153  Q
    ||| | || |||||||||||||||    
T  26550794 gaactattccttgtcctcaaggaa 26550771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 15533359 - 15533444
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataa 187  Q
    |||||||| |||||||||||||| ||||||| || |||||||||||||||||||| ||||  | ||||||||||| ||||| ||||||    
T  15533359 atgacagaatgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaaccaact--taaaatgaaaaatcacagttaaataa 15533444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 30764043 - 30763944
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaa 149  Q
    |||||| | |||| ||||||||| |||||||| ||||||||| |||||||||||| || |||||||||||||| ||||||||| | || ||| |||||||    
T  30764043 taataaaactagaataaaaacttaattaaaaa-gactctaaatatgtgatatgacggactgtcatcacaaccccaaacttgaactattccttatcctcaa 30763945  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 22938017 - 22938127
Alignment:
Q  78 aaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaa-tgaaaaatga 176  Q
    |||||||||||||||| |||  |||||||| |||||||||||||| |||||||||   || |||||||||||||||   |||||  ||| ||| ||||||    
T  22938017 aaaaagactctaaaaacgtggaatgacagactgtcatcacaaccccaaacttgaaccattccttgtcctcaaggaattcacttgaaaaattgacaaatga 22938116  T
Q  177 cagtaaaataa 187  Q
    |||||||||||    
T  22938117 cagtaaaataa 22938127  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 19688808 - 19688713
Alignment:
Q  57 aatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||||| || |||||||| ||||| |||||||||   ||  ||||||||||||||    
T  19688808 aatagactaaaaacttaaataaaaat-actctaaaaatgtgatatgacggactgtcatcataaccccaaacttgaacaattcattgtcctcaaggaa 19688713  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 40800638 - 40800723
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||| | ||||||| ||| ||||||||||||||||||||||||||| || ||||||||    
T  40800638 ctctaaattaaatactaaactaataaaaatagattgaaaactt-atttaaaaagactctaaaaatgtgatatgacggactgtcatca 40800723  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 22038318 - 22038230
Alignment:
Q  98 atatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaacttgttaaatgaaaaatgacagtaaaataa 187  Q
    |||||||  |||||||||||||||| ||||||| || ||||||||||||||||||||  |||| | ||||||||| | |||| |||||||    
T  22038318 atatgacctagtgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaacttactt-taaaatgaaaattaacagaaaaataa 22038230  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 2837651 - 2837727
Alignment:
Q  77 aaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||| |||||||||| |||| ||||| || ||| |||||||||| ||||||||||  || |||||||||||||||    
T  2837651 aaaaaaaactctaaaaaagtgaaatgacggactgttatcacaaccccaaacttgaatcattccttgtcctcaaggaa 2837727  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 36356353 - 36356266
Alignment:
Q  19 attcgaagtgcctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacaga 107  Q
    ||||||| || |||||||| ||||| |||||||||||||||| | ||||||||| ||| |||| |||| ||||||| || |||||||||    
T  36356353 attcgaattggctctaaattaaacactatactaataataataaagtaaaaacttaatt-aaaaggactataaaaatatggtatgacaga 36356266  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 28566805 - 28566890
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||| | |||| || ||| ||||||||||||||||||||||||||| || ||||||||    
T  28566805 ctctaaattaaatactaaactaataaaaatagattgaaaattt-atttaaaaagactctaaaaatgtgatatgacggactgtcatca 28566890  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 32226450 - 32226385
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    ||||||||||||||||||||||| || ||||   |||||||||||||||||||||| | ||||||||    
T  32226450 taataataatagactaaaaacttaatcaaaagt-actctaaaaatgtgatatgacatattgtcatca 32226385  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 26547334 - 26547247
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcaca 118  Q
    |||||||| ||| | || |||||||| |||||| | |||| || ||| ||||||||| ||||||||||||||||| || ||||||||||    
T  26547334 ctctaaattaaatactaaactaataaaaatagattgaaaattt-atttaaaaagactttaaaaatgtgatatgacggactgtcatcaca 26547247  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 39657831 - 39657897
Alignment:
Q  33 taaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatat 101  Q
    ||||| ||| |||| |||||||| ||||||||||||| || ||||||| ||||||||||||||||||||    
T  39657831 taaatgaaatattaaactaataa-aatagactaaaaatttaattaaaa-agactctaaaaatgtgatat 39657897  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 43490831 - 43490792
Alignment:
Q  78 aaaaagactctaaaaatgtgatatgacagagtgtcatcac 117  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  43490831 aaaaagactctaaaaatgtgaaatgacagactgtcatcac 43490792  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 18018540 - 18018491
Alignment:
Q  107 agtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaa 156  Q
    |||| ||||||||||  ||||||  |||||||||||||||||||||||||    
T  18018540 agtgacatcacaacctcaaacttccattgttacttgtcctcaaggaacaa 18018491  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 40885639 - 40885694
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgac 104  Q
    |||||||| ||||||||||||| || ||  |||| ||||||||||||||||||||||    
T  40885639 actaataaaaatagactaaaaattt-atctaaaatgactctaaaaatgtgatatgac 40885694  T

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Target: scaffold0124 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 11778 - 11691
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgat-taaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||||||||||||| |  ||||||||||||||||||||| ||||||| || ||||||||    
T  11778 ctctaaattaaatactaaactaataaaaatagactaaaaacttaaactaaaaaagactctaaaaatgtaatatgacggactgtcatca 11691  T

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Target: scaffold0360 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 1707 - 1627
Alignment:
Q  50 taataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatcacaaccctaaacttgaa 132  Q
    |||||| |||||||||||| ||| |||||||| |||| ||||||||||||||||| || |||||||||||| | |||||||||    
T  1707 taataaaaatagactaaaa-cttaattaaaaa-gactttaaaaatgtgatatgacggattgtcatcacaactccaaacttgaa 1627  T

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Target: scaffold0298 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 12779 - 12864
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||||| || ||||||||    
T  12779 ctctaaattaaatactaaactaataaaaatagactaaaaacttaactaaaa-agactctaaaaatgtaatatgacggactgtcatca 12864  T

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Target: scaffold0298; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 16549 - 16634
Alignment:
Q  30 ctctaaatcaaacattatactaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| ||| | || |||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||||| || ||||||||    
T  16549 ctctaaattaaatactaaactaataaaaatagactaaaaacttaactaaaa-agactctaaaaatgtaatatgacggactgtcatca 16634  T

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Target: scaffold1484 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1484
Description:

Target: scaffold1484; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 1357 - 1301
Alignment:
Q  98 atatgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaac 154  Q
    |||||||  |||||||||||||||| ||||||| || ||||||||||||||||||||    
T  1357 atatgacctagtgtcatcacaaccccaaacttgcatcgttacttgtcctcaaggaac 1301  T

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Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 8150 - 8210
Alignment:
Q  100 atgacagagtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    |||||||| |||||||||||||| |||||||  | |||||||||||||||||||| |||||    
T  8150 atgacagaatgtcatcacaaccccaaacttgcttcgttacttgtcctcaaggaaccaactt 8210  T

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Target: scaffold1832 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1832
Description:

Target: scaffold1832; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 610 - 677
Alignment:
Q  48 actaataataatagactaaaaacttgattaaaaaagactctaaaaatgtgatatgacagagtgtcatca 116  Q
    |||||||| |||| | | ||||||| ||||||| ||||||||||||||||||||||| || ||||||||    
T  610 actaataaaaatataattaaaacttaattaaaa-agactctaaaaatgtgatatgacggactgtcatca 677  T

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Target: scaffold0072 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 38381 - 38422
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaag 150  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  38381 tgtcatcacaaccccaaacttaaattgttgcttgtcctcaag 38422  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 42026 - 42078
Alignment:
Q  108 gtgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaacaaactt 160  Q
    ||||||||||||||  ||||||| || ||| ||||| ||||||||||||||||    
T  42026 gtgtcatcacaacctcaaacttgcatcgtttcttgttctcaaggaacaaactt 42078  T

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Target: scaffold0048 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 28280 - 28236
Alignment:
Q  109 tgtcatcacaaccctaaacttgaattgttacttgtcctcaaggaa 153  Q
    |||||||||||||| |||||||||  ||| |||||||||||||||    
T  28280 tgtcatcacaaccccaaacttgaaccgttccttgtcctcaaggaa 28236  T

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