View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_38 (Length: 233)
Name: NF15804_low_38
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7035877 - 7036099
Alignment:
| Q |
1 |
atctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgag |
100 |
Q |
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| T |
7035877 |
atctttcccatgaaagacacttaaaataatacagttccctccagatgaaataatatgtgacactacagcccattttaatgtatataaaccaactggtgag |
7035976 |
T |
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| Q |
101 |
caaatcacctaaagccannnnnnnnnnnnnnagaattgtc-atgtatcatccagaaaatctcacttgaacaccata-----ttattttattttattttgg |
194 |
Q |
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| T |
7035977 |
caaatcacctaaagccatttttttctttttcagaattgtcaatgtatcatccagaaaatctcacttgaacaccatattattttattttattttattttgg |
7036076 |
T |
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| Q |
195 |
gtgtggagttggttgggttgcac |
217 |
Q |
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||||||||||||||||||||||| |
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| T |
7036077 |
gtgtggagttggttgggttgcac |
7036099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7897117 - 7897329
Alignment:
| Q |
1 |
atctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7897117 |
atctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgag |
7897216 |
T |
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| Q |
101 |
caaatcacctaaagccannnnnnnnnnnnnnagaattgtc-atgtatcatccagaaaatctcacttgaacaccatattattttattttattttgggtgtg |
199 |
Q |
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| T |
7897217 |
caaatcacctaaagccatttttttcttttttagaattgtcaatgtatcatccagaaaatctcactcgaacaccata-----ttattttattttgggtgtg |
7897311 |
T |
|
| Q |
200 |
gagttggttgggttgcac |
217 |
Q |
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| T |
7897312 |
gagttggttgggttgcac |
7897329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 29380357 - 29380425
Alignment:
| Q |
44 |
gatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagcaaatcacctaa |
112 |
Q |
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|||||||||||||| ||||||||| | || |||||||| |||||||||||||| |||||| ||||||| |
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| T |
29380357 |
gatgaaataatatgttacactacagtctatcttaatgtacataaaccaactggttagcaaaccacctaa |
29380425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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