View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15804_low_4 (Length: 618)

Name: NF15804_low_4
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15804_low_4
NF15804_low_4
[»] chr5 (3 HSPs)
chr5 (62-604)||(9102042-9102584)
chr5 (362-420)||(1554789-1554847)
chr5 (16-63)||(9101538-9101585)
[»] chr4 (4 HSPs)
chr4 (362-420)||(36280284-36280342)
chr4 (362-417)||(50091304-50091359)
chr4 (362-414)||(11942579-11942631)
chr4 (362-416)||(10065307-10065355)
[»] chr2 (5 HSPs)
chr2 (362-418)||(4639991-4640047)
chr2 (362-417)||(34099088-34099143)
chr2 (362-416)||(9483989-9484043)
chr2 (362-415)||(13467436-13467489)
chr2 (362-415)||(13464697-13464750)
[»] chr7 (2 HSPs)
chr7 (362-417)||(37587445-37587500)
chr7 (362-416)||(46135165-46135219)
[»] chr3 (3 HSPs)
chr3 (362-417)||(3861149-3861204)
chr3 (362-416)||(35188984-35189038)
chr3 (362-405)||(49019534-49019577)
[»] chr1 (2 HSPs)
chr1 (362-417)||(5242608-5242663)
chr1 (362-415)||(37306378-37306431)
[»] chr6 (2 HSPs)
chr6 (362-416)||(8001350-8001404)
chr6 (362-415)||(20473489-20473542)


Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 62 - 604
Target Start/End: Original strand, 9102042 - 9102584
Alignment:
Q  62 gttgaacaaccattgatgaagatgaattcaatgtgaatgaaaatatacctcgagaaaacttttcctcatgtttattgcacttctcacagaaatacatgct 161  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9102042 gttgaacaaccattgatgaagatgaatacaatgtgaatgaaaatatacctcgggaaaacttttcctcatgtttattgcacttctcacagaaatacatgct 9102141  T
Q  162 taaatcgggataaactagggtttattagttgattacagcgctaatttgcattttaattacagaatgtattttaattaagtgtttattagttgattttctt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9102142 taaatcgggataaactagggtttattagttgattacagcgctaatttgcattttaattacagaatgtattttacttaagtgtttattagttgattttctt 9102241  T
Q  262 gcccaaaatttgttatcgatatttctgtgctgaagatatggagaatcactagttgagtgttctgccaaaacaacctggaataaggatggaaaattactgc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9102242 gcccaaaatttgttatcgatatttctgtgctgaagatatggagaatcactagttgagtgttctgccaaaacaacctggaataaggatggaaaattactgt 9102341  T
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaaattctttttctttcaaaataaaaaggatggaaaattaccctctt 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102342 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaattctttttctttcaaaataaaaaggatggaaaattaccctctt 9102441  T
Q  462 tgcaccaaatctccaaggcaacgtaacatatacaaccaaggttgtcatacttgagagtctacatagacttgagggaaatccgtagactcgacttgtaaga 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102442 tgcaccaaatctccaaggcaacgtaacatatacaaccaaggttgtcatactcgagagtctacatagacttgagggaaatccgtagactcgacttgtaaga 9102541  T
Q  562 gtctacacaaacacacaccctcgcacaagacactttcttatga 604  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9102542 gtctacacaaacacacaccctcgcacaagacactttcttatga 9102584  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 1554789 - 1554847
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaaatt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1554789 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaatt 1554847  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 9101538 - 9101585
Alignment:
Q  16 catctgacagttaaattaaaatgaaagaccagtataaatgaaataggt 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101538 catctgacagttaaattaaaatgaaagaccagtataaatgaaataggt 9101585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 36280284 - 36280342
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaaatt 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36280284 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaaatt 36280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 50091304 - 50091359
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 417  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  50091304 tagagcacctgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 50091359  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 11942631 - 11942579
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagc 414  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  11942631 tagatcacccgtttagtaagcgggacgtcttgagttcgactctcaacgagagc 11942579  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 10065307 - 10065355
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 416  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  10065307 tagagcacccgtttagtaagcgggaggtc------tcaactctcaatgagagcaa 10065355  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 4640047 - 4639991
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4640047 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaaa 4639991  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 34099088 - 34099143
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34099088 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 34099143  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 9484043 - 9483989
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9484043 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaa 9483989  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 13467489 - 13467436
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagca 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13467489 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagca 13467436  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 13464750 - 13464697
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagca 415  Q
    ||||||||  ||||||||||||||||||||||| ||||||| | || |||||||    
T  13464750 tagagcacttgtttagtaagcgggaggtcttgaattcaacttttaacgagagca 13464697  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 37587500 - 37587445
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37587500 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 37587445  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 46135165 - 46135219
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46135165 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 46135219  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 3861204 - 3861149
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3861204 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 3861149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 35188984 - 35189038
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35188984 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 35189038  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 49019577 - 49019534
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctc 405  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  49019577 tagagcacctgtttagtaagcgggaggtcttgagttcaactctc 49019534  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 5242608 - 5242663
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5242608 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 5242663  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 37306378 - 37306431
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37306378 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 37306431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 8001350 - 8001404
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8001350 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 8001404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 20473542 - 20473489
Alignment:
Q  362 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20473542 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 20473489  T

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