View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_42 (Length: 216)
Name: NF15804_low_42
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_42 |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 25614841 - 25614660
Alignment:
| Q |
11 |
atcatcaaaattaaaccaagataactcacaaataaaatttatataatttctagtggtataaaataccaactttccagacaatnnnnnnnnctaaaagtaa |
110 |
Q |
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| T |
25614841 |
atcatcaaaattaaaccaagacaactcacaaataaaatttatataatttctagtagtataaaataccaactttccagacaatagagaaaactaaaagtaa |
25614742 |
T |
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| Q |
111 |
aagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccattatacttatc |
192 |
Q |
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| T |
25614741 |
aagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccattatacttatc |
25614660 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 31262838 - 31262760
Alignment:
| Q |
102 |
taaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacacc |
180 |
Q |
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| T |
31262838 |
taaaggtaaaagcatcgaaacagaatttttatcaatccacaattgcagtctaccctaaaattcattcatactaaacacc |
31262760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 1090 - 1169
Alignment:
| Q |
103 |
aaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccat |
182 |
Q |
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| T |
1090 |
aaaaataaaagcatccaaaccgaattgttatcaatccacaattgtagtccatcctagaatacatcaatactaaagaccat |
1169 |
T |
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