View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_43 (Length: 212)
Name: NF15804_low_43
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 32671994 - 32672199
Alignment:
| Q |
1 |
atcgtaacaagtaggataaacatgttctatatttgagatatttcaaaatttatttatttattctattctaatcggtttaattaatgaaatacattaccat |
100 |
Q |
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|||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32671994 |
atcgtaacaattaggataaacctgttgtatatttgagatatttcaaaatttatttatttattctattctaatcggtttaattgatgaaatacattaccat |
32672093 |
T |
|
| Q |
101 |
gatttgtggaacc------------ctacgggtgatatttgttacaattaatcattttaaatgtgccaactaagtttgacttggtatacacgttgataac |
188 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| ||||||| |
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| T |
32672094 |
gatttgtggaaccccttgaactattctacgggtgatatttgttacaattaatcattttaaatgtacgaaataagtttgacttggtatacacgatgataac |
32672193 |
T |
|
| Q |
189 |
tcatat |
194 |
Q |
| |
|
|||||| |
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|
| T |
32672194 |
tcatat |
32672199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 38641121 - 38641089
Alignment:
| Q |
143 |
ttttaaatgtgccaactaagtttgacttggtat |
175 |
Q |
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|
| T |
38641121 |
ttttaagtgtgccaactaagtttgacttggtat |
38641089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 44312754 - 44312790
Alignment:
| Q |
23 |
tgttctatatttgagatatttcaaaatttatttattt |
59 |
Q |
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|||| ||||||||||||||||||||| |||||||||| |
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| T |
44312754 |
tgttgtatatttgagatatttcaaaagttatttattt |
44312790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 44316559 - 44316595
Alignment:
| Q |
23 |
tgttctatatttgagatatttcaaaatttatttattt |
59 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||| |
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|
| T |
44316559 |
tgttgtatatttgagatatttcaaaagttatttattt |
44316595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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