View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_5 (Length: 588)
Name: NF15804_low_5
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 97 - 459
Target Start/End: Complemental strand, 26990018 - 26989659
Alignment:
| Q |
97 |
tattattcctcccttcctataggacttggagtggcgtgtaggttgggatagttgaagatggttggtttgttaacttcacttaccattcaaatgctttttt |
196 |
Q |
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| T |
26990018 |
tattattcctcccttcctataggacttggagtggcgtgtaggttgggatagtggaagatggttggtttgttaacttcacttaccattc-aatgctttttt |
26989920 |
T |
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| Q |
197 |
caattttcatagagattgagaatttattcaatgtggggtggcacatgaagggcattgtgtacctcactctt--agatattgtcatgttgataaaagtatc |
294 |
Q |
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| T |
26989919 |
ccattttc--agagattgagaatttattcaatgtg-----------gaagggtattgtgtacctcactcttgaatctattgtcatattgataaaagtata |
26989833 |
T |
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| Q |
295 |
tttgaaagaaaatttaaaagaggaaagtgaatagacaactcat--------tagtctttattcttaagcaacaaa-aggtgtccatagggattaaggaag |
385 |
Q |
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| T |
26989832 |
tttgaaagaaaatttaaaagaggaaagtgaatagacaactcattactacagtagtctttattcttaagcaacaaaggggtggccatagggattaaggaag |
26989733 |
T |
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| Q |
386 |
gcacatttttcctaatcacaagtttaacttttggaaaagtttctttattatgtagcatagcactactagaattt |
459 |
Q |
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| T |
26989732 |
gcacatttttcctaatcataagtttaacttttggaaaagtttctttattatgtagcatagcactactagaattt |
26989659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 446 - 570
Target Start/End: Complemental strand, 26989639 - 26989512
Alignment:
| Q |
446 |
cactactagaatttccacttttatattttcggtaattctaaatatgtactccatttgagaaga---agaatgttaattaactccactatattttcttgat |
542 |
Q |
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| T |
26989639 |
cactactagaatttccacttttatattttcggtaattctaaatatgtactccatttgagaagaagaagaatgttaattaactccattatattttcttgat |
26989540 |
T |
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| Q |
543 |
gttaatgtactgtaatgttagtaactat |
570 |
Q |
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| T |
26989539 |
gttaatgtactgtaatgttagtaactat |
26989512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 26990059 - 26990018
Alignment:
| Q |
28 |
ttacctttattttttgagattataaggaataagaaaggaaat |
69 |
Q |
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| T |
26990059 |
ttacctttattttttgagattataaagaatgagaaatgaaat |
26990018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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