View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15804_low_6 (Length: 559)
Name: NF15804_low_6
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15804_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 51881452 - 51880901
Alignment:
| Q |
1 |
agagggattatactattaatatttcattaccacatatgtgacttgattattattccatttatcctatatagtacgattattatgttacattactaacacg |
100 |
Q |
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| T |
51881452 |
agagggattatactattaatatttcatgaccacatatgtgacttgattattattccatttatcctatatagtacgattattatgttacattactaacact |
51881353 |
T |
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| Q |
101 |
gacaaaacttagaaggttgataatatacacacgcttacagtaactcaca----taacttaacatatattgggtccaaatcctatatatccattagctcca |
196 |
Q |
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| T |
51881352 |
gacaaaacttagaaggttgataatatacacacgcttacagtaactcacacacataacttaacatatattgggtccaaatcctatatatccattagctcca |
51881253 |
T |
|
| Q |
197 |
tccactgaaatttcaatcccttcttgctgaatgtttcctatgatggaaagtcctgaagaagaaggagcaaatgcaaagcaaaaagttcccacactatcca |
296 |
Q |
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| T |
51881252 |
tccactgaaatttcaatcccttcttgctggatgtttcctatgatggaaagtcctgaagaagaaggagcaaatgcaaagcaaaaagttcccacactatcca |
51881153 |
T |
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| Q |
297 |
ctggaattaagaagttcctagctggaagggtcaatataggcccacccaagaaataaaatgatatggttggaacccgaaccgtcacaaacccgtttaaatc |
396 |
Q |
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| T |
51881152 |
ctggaattaagaagttcctagctggaagggtcaatataggcccacccaagaaataaaatgatatggttggaacccgaaccgtcacaaacccgtttaaatc |
51881053 |
T |
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| Q |
397 |
ataacatgtgtcaaatatggatactcctgacgttttgggtaggtttgtcgtttgagcaacaaatgcatctcgaaatgcattgtaagccgctgcaggcaac |
496 |
Q |
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| T |
51881052 |
ataacatgtgtcaaatatggatactcctgacgttttgggtaagtttgtcgtctgagcaacaaatgcatctcgaaatgcattgtaagccgctgcaggcaac |
51880953 |
T |
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| Q |
497 |
ctcgtcacggcagtgccggtgtccatgaccacccctccctcacccaattcat |
548 |
Q |
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| T |
51880952 |
ctcgtcacggcagtgccggtgtccatgaccacccctccctcacccaattcat |
51880901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 163 - 411
Target Start/End: Original strand, 14514231 - 14514479
Alignment:
| Q |
163 |
attgggtccaaatcctatatatccattagctccatccactgaaatttcaatcccttcttgctgaatgtttcctatgatggaaagtcctgaagaagaagga |
262 |
Q |
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| T |
14514231 |
attgggtccaaatcctacaaaaccattagttccatcgatagaaacctgaatcccttcttgctgaatgttccctataatggaaagaccagaaggtgaagga |
14514330 |
T |
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| Q |
263 |
gcaaatgcaaagcaaaaagttcccacactatccactggaattaagaagttcctagctggaagggtcaatataggcccacccaagaaataaaatgatatgg |
362 |
Q |
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||||||||||| || |||||||| ||| ||| | || || || || ||||| || |||| ||| || || | ||||| | |||||||| || | | |
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| T |
14514331 |
gcaaatgcaaaacagaaagttccgacatcatcggccgggatcaaaaaattcctggcgggaaaggttaagatttgaccacctgaaaaataaaacgacactg |
14514430 |
T |
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| Q |
363 |
ttggaacccgaaccgtcacaaacccgtttaaatcataacatgtgtcaaa |
411 |
Q |
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||||||| ||||| |||||||| ||||| || |||||||| |||||||| |
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| T |
14514431 |
ttggaactcgaacggtcacaaaaccgttcaagtcataacacgtgtcaaa |
14514479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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