View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15804_low_7 (Length: 543)

Name: NF15804_low_7
Description: NF15804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15804_low_7
NF15804_low_7
[»] chr4 (14 HSPs)
chr4 (341-520)||(39520837-39521016)
chr4 (341-457)||(39575542-39575658)
chr4 (423-520)||(39510579-39510676)
chr4 (341-470)||(39580071-39580200)
chr4 (114-256)||(39543900-39544039)
chr4 (114-202)||(39510912-39511000)
chr4 (124-254)||(39524606-39524733)
chr4 (135-256)||(39580292-39580410)
chr4 (8-73)||(39544104-39544169)
chr4 (3-73)||(39575950-39576020)
chr4 (3-73)||(39521308-39521378)
chr4 (115-210)||(39575795-39575884)
chr4 (424-469)||(39524376-39524421)
chr4 (4-73)||(39524808-39524877)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 39521016 - 39520837
Alignment:
Q  341 ccttatcattatgattttgtggttcgctccgatggctctgggaaactgaaggttaccgtacaacctaatgtgtcggattttgtaccgaatgcatttttaa 440  Q
    |||||| ||||||||||||||||||  ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39521016 ccttattattatgattttgtggttcaatccgatgcctctgggaacctgaatgttaccgtacaacctaatgtgtcggattttgtaccgaaagcatttttaa 39520917  T
Q  441 atgggctagaactaatggaagtgattgaacaatctagtaaaattcccccggatgatatggattcaaaagttagtcttcct 520  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||   |||||| |||||||||| ||||||||||||    
T  39520916 atgggctagaactaatgaaagtgattgaacaatctagtgaaattcccttcgatgatttggattcaaaggttagtcttcct 39520837  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 39575658 - 39575542
Alignment:
Q  341 ccttatcattatgattttgtggttcgctccgatggctctgggaaactgaaggttaccgtacaacctaatgtgtcggattttgtaccgaatgcatttttaa 440  Q
    |||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  39575658 ccttattattatgattttgtggttcaatccgatgcctctgggaaactgaaggttaccgtacaacctaatgtgttggattttgtaccgaacgcatttttaa 39575559  T
Q  441 atgggctagaactaatg 457  Q
    |||| ||||||||||||    
T  39575558 atggactagaactaatg 39575542  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 423 - 520
Target Start/End: Complemental strand, 39510676 - 39510579
Alignment:
Q  423 taccgaatgcatttttaaatgggctagaactaatggaagtgattgaacaatctagtaaaattcccccggatgatatggattcaaaagttagtcttcct 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  39510676 taccgaatgcatttttaaatgggctagaactaatggaagtgattgaacaatctagtgaaattcccccggatgatatggattcgaaggttagtcttcct 39510579  T

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Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 341 - 470
Target Start/End: Complemental strand, 39580200 - 39580071
Alignment:
Q  341 ccttatcattatgattttgtggttcgctccgatggctctgggaaactgaaggttaccgtacaacctaatgtgtcggattttgtaccgaatgcatttttaa 440  Q
    |||||| ||||||||||||||||||| ||||||  |||| |   | ||||||||||| || ||||||||||| | |||||||||||||||||||||||||    
T  39580200 ccttattattatgattttgtggttcgttccgataactctagcctattgaaggttaccataaaacctaatgtgaccgattttgtaccgaatgcatttttaa 39580101  T
Q  441 atgggctagaactaatggaagtgattgaac 470  Q
    ||||||||||||||||| ||||||||||||    
T  39580100 atgggctagaactaatgaaagtgattgaac 39580071  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 114 - 256
Target Start/End: Complemental strand, 39544039 - 39543900
Alignment:
Q  114 tatatattgctccagatattgtttatcaaactgctaaagagagtaaaaacggttctaaaggtttaaacataagttggagtgttcctgtggagaagaagaa 213  Q
    ||||||||||||| ||   ||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |   | ||||     
T  39544039 tatatattgctccggacgctgtttatgaaactgccaaagagagcaaaagcggttctaaaggtttaaacataagttggagtgttcctgttg---aaaagag 39543943  T
Q  214 tactgatcatttccttaggcttcacttttgcgacaattttaat 256  Q
    || ||||||||||||||||||||| || || |||| |||||||    
T  39543942 tattgatcatttccttaggcttcatttctgtgacatttttaat 39543900  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 39511000 - 39510912
Alignment:
Q  114 tatatattgctccagatattgtttatcaaactgctaaagagagtaaaaacggttctaaaggtttaaacataagttggagtgttcctgtg 202  Q
    ||||||||| |||||||||||||||| ||||||   ||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  39511000 tatatattggtccagatattgtttataaaactggccaagagagtgcaaacggttcaaaaggtttaaacataagttggagtgttcctgtg 39510912  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 39524733 - 39524606
Alignment:
Q  124 tccagatattgtttatcaaactgctaaagagagtaaaaacggttctaaaggtttaaacataagttggagtgttcctgtggagaagaagaatactgatcat 223  Q
    |||||||||||||||| ||||||| |||| ||||   || ||||| |  ||||||||||||||||||||||||||||||||||   ||||||  ||||||    
T  39524733 tccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagttggagtgttcctgtggaga---agaatatagatcat 39524637  T
Q  224 ttccttaggcttcacttttgcgacaatttta 254  Q
    ||||||| |||||| ||||| |||| |||||    
T  39524636 ttccttatgcttcatttttgtgacattttta 39524606  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 39580410 - 39580292
Alignment:
Q  135 tttatcaaactgctaaagagagtaaaaacggttctaaaggtttaaacataagttggagtgttcctgtggagaagaagaatactgatcatttccttaggct 234  Q
    ||||| ||| ||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||   | ||||||| |||||||| ||| |||||    
T  39580410 tttataaaagtgccaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgttcctgtgg---aaaagaatattgatcattacctcaggct 39580314  T
Q  235 tcacttttgcgacaattttaat 256  Q
    ||| || || |||| |||||||    
T  39580313 tcatttatgtgacatttttaat 39580292  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 39544169 - 39544104
Alignment:
Q  8 gatactttatcgagagaatggttgccagatgacagttatataacaactccacaaaacgctcagaat 73  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||    
T  39544169 gatactttatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaat 39544104  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 39576020 - 39575950
Alignment:
Q  3 gaactgatactttatcgagagaatggttgccagatgacagttatataacaactccacaaaacgctcagaat 73  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| |||| | || |||||||||| |||||    
T  39576020 gaactgatactttatcgagagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaat 39575950  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 39521378 - 39521308
Alignment:
Q  3 gaactgatactttatcgagagaatggttgccagatgacagttatataacaactccacaaaacgctcagaat 73  Q
    |||| ||||| |||||||||||||||||  |||||||||||||| |||| | ||||||||||||| |||||    
T  39521378 gaaccgatacattatcgagagaatggttagcagatgacagttatgtaactaatccacaaaacgctaagaat 39521308  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 39575884 - 39575795
Alignment:
Q  115 atatattgctccagatattgtttatcaaactgctaaagagagtaaaaacggttctaaaggtttaaacataagttggagtgttcctgtggagaagaa 210  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||  ||||||||||        | ||||||||||||||||||||| ||||||||    
T  39575884 atatattgctccagatattgtttataaaactggcaaagagagtattaacggttcta------gcagcataagttggagtgttcctgtagagaagaa 39575795  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 39524421 - 39524376
Alignment:
Q  424 accgaatgcatttttaaatgggctagaactaatggaagtgattgaa 469  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||    
T  39524421 accgaatgcttttttaaacgggctagaactaatgaaagtgattgaa 39524376  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 39524877 - 39524808
Alignment:
Q  4 aactgatactttatcgagagaatggttgccagatgacagttatataacaactccacaaaacgctcagaat 73  Q
    |||||||||  |||| ||||||||||| ||||||||||| ||||||||   ||| ||||||||| |||||    
T  39524877 aactgatacactatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaat 39524808  T

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