View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15805_high_2 (Length: 525)
Name: NF15805_high_2
Description: NF15805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15805_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 11 - 507
Target Start/End: Complemental strand, 29704008 - 29703513
Alignment:
| Q |
11 |
aagaaccacaagcatattgcaaaacaaacctgcttcatttgaatcagcacatgtctcaaaactgtcttgcagatttaaacttgagtcctcatgtgaaacc |
110 |
Q |
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| T |
29704008 |
aagaaccacaagcatattgcaaaacaaacctgcttcatttgaatcagcacatgtctcaaaactgtcttgcagatttaaacttgagtcctcacgtgaaacc |
29703909 |
T |
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| Q |
111 |
tccacatgattgacattctctgaaccctcttcttttggttcagcctgcaacacatcctctgcatcagttgatttcacttctgaaccagaatcatgtgact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29703908 |
tccacatgattgacattctctgaaccctcttcttttggatcagcctgcaacacatcctctgcatcagttgatttcacttctgaaccagaatcatgtgact |
29703809 |
T |
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| Q |
211 |
ggctttcacagtcggctttgtttagagaggaaacttccacttcatcagtgttctgagaaaccacatttgattctgtctgcgaactagcccctgctgataa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29703808 |
ggctttcacagtcggctttgtttagagaggaaacttccacttcatcagtgttctgagaaaccacatttgattctgtctgcgaactagcccctgctgataa |
29703709 |
T |
|
| Q |
311 |
acaatttcatagttgattaaaatcaatcatcacacaaacacaaattcgaataagaaaagataattcacaatagttaaacataatgagatccagcataccg |
410 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||| ||||| || ||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
29703708 |
acaatttcatagttgattaaaatcaatcattacataaacacaaatgcgaatgagcaaaaataattcacaatagttaaacataatgagat-cagcataccg |
29703610 |
T |
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| Q |
411 |
ttttcagtctcaattgagcccccttcattctgggagacactcatttcttcagaaacattatcattcttggttgattccatgtcctcagtgtccgcca |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29703609 |
ttttcagtctcaattgagcccccttcattctgggagacactcatttcttcagaaacatcatcattcttggttgattccatgtcctcagtgtccgcca |
29703513 |
T |
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