View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15805_high_4 (Length: 489)
Name: NF15805_high_4
Description: NF15805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15805_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 124 - 473
Target Start/End: Complemental strand, 11382522 - 11382172
Alignment:
| Q |
124 |
atagcatttcattaattaaaatataatcattataaatccgtacaacgataacaatcaagcattatcttgctaagtatcgtcggcattaatcataacactc |
223 |
Q |
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| T |
11382522 |
atagcatttcaataattaaaatttaatcattataatttcgtacaacgataacaatcaaacattatcttgctaagtatcatcggcattaattataacacta |
11382423 |
T |
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| Q |
224 |
acggtatttgtcgccgctttagcaagatcatggacaatcttatttgcttat-tttacacaaactccacactagagtttccaaattatatggttagaaggt |
322 |
Q |
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| T |
11382422 |
acggtatatatggccactttagcaagatcatgaacaatcttatttgtttatctttgcacaaactccacgctagagtttccaaattatatgattagaaggt |
11382323 |
T |
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| Q |
323 |
tccatgttttttaaataatctttttccattaaccaagtgattgggatggatctccttacaaattgttcgaaagaatcttaattcgattctcgacttaaat |
422 |
Q |
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| T |
11382322 |
tccatattttttaaataatctttttccgttaaccaagtgattgggatggatctccttacaaattgttcgaaagaatcttaattcgattctcgacttaaat |
11382223 |
T |
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| Q |
423 |
tgtgtgcttgcacaatatgtattgtcttttaaaccttatcttactaatatt |
473 |
Q |
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| T |
11382222 |
tgtgtgcttgcacaatatgtattgtcttttaaaccttatcttactaatatt |
11382172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 11382676 - 11382581
Alignment:
| Q |
11 |
aagaagtatacaacgaagacagagcacaatcactacttctgcttcaaaaggattctcatttaactcggtttgtatacttcagcttatacaaactat |
106 |
Q |
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| T |
11382676 |
aagaagtatacaacgaagacagagcacaatcactacttctgcttcaaaaggattctcatttaattcggtttgcatactttagcttatacaaactat |
11382581 |
T |
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