View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15805_high_7 (Length: 406)
Name: NF15805_high_7
Description: NF15805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15805_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 2925566 - 2925179
Alignment:
| Q |
1 |
ataaacaaagatgcgaagatggtataggattaaattaaaacatggtaacataaccttttttgtaaggtcggattcatgctgcttcctaagattctctgat |
100 |
Q |
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| T |
2925566 |
ataaacaaagatgcgaagatggtataggattaaattaaaacatggtaacataaccttttttgtaaagtcggattcatgctgcttcctaagattctctgat |
2925467 |
T |
|
| Q |
101 |
ttcaaatcttatatattgacaaaatccccttttgnnnnnnnn-gcattggaagcttatgttgtgttactctctactctgatgatgcataagaagccaaaa |
199 |
Q |
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| T |
2925466 |
ttcaaatcttatatattgacaaaatccccttttgtttttttttgcattggaagcttatgttatgttactctctactctcatgatgcataagaagccaaaa |
2925367 |
T |
|
| Q |
200 |
gcagtttggaagtattgcacgcatttaatatcattatttagaagcttacatttggtgacaaatattcattgcaagacaattccacatttgcgaaatcatc |
299 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2925366 |
gcagtttggaagcattgcacgcatttaatatcattatttagaagcttacatttggtgacaaatattcattgcaagacaattccacatttgcgaaatcatc |
2925267 |
T |
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| Q |
300 |
aagttaaaaaggaaacactttaattccaggttcaactttatgccaaaaagcctgttaatacttttcaacatttaagatatgtaatacc |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2925266 |
aagttaaaaaggaaacactttaattccaggttcaactttatgccaaaaagcctgtttatacttttcaacatttaagatatgtaatacc |
2925179 |
T |
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