View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15805_low_1 (Length: 630)
Name: NF15805_low_1
Description: NF15805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15805_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 347 - 585
Target Start/End: Original strand, 48277475 - 48277713
Alignment:
| Q |
347 |
ctcacattcgtttgcttcataattagactaagagtgacacactttcattactcaatccaattctagccacttgattatacgccacatcaatctagcacct |
446 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |
|
|
| T |
48277475 |
ctcacatttgtttgcttcataataagactaagagtgacacactttcattactcaatccaattctagccacttgattatccgtcacatcaatctagcatct |
48277574 |
T |
|
| Q |
447 |
taaaaactacattcctctttagatgatactataaagtatgtgagacctttgaatctacatgcagctatacccgtctaaaaccgcaagattcaatttctct |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48277575 |
taaaaactacattcctctttagatgatactataaagtatgtgcgacctttgaatctacatgcagctgtacccgtctaaaaccgcaagattcaatttctct |
48277674 |
T |
|
| Q |
547 |
aataccaaaggccatgtgacatgccctaccacactcttc |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48277675 |
aataccaaaggccatgtgacatgccctaccacactcttc |
48277713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 46 - 284
Target Start/End: Complemental strand, 48277713 - 48277475
Alignment:
| Q |
46 |
gaagagtgtggtagggcatgtcacatggcctttggtattagagaaattgaatcttgcggttttagacgggtatagctgcatgtagattcaaaggtctcac |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
48277713 |
gaagagtgtggtagggcatgtcacatggcctttggtattagagaaattgaatcttgcggttttagacgggtacagctgcatgtagattcaaaggtcgcac |
48277614 |
T |
|
| Q |
146 |
atactttatagtatcatctaaagaggaatgtagtttttaaggtgctagattgatgtggcgtataatcaagtggctagaattggattgagtaatgaaagtg |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48277613 |
atactttatagtatcatctaaagaggaatgtagtttttaagatgctagattgatgtgacggataatcaagtggctagaattggattgagtaatgaaagtg |
48277514 |
T |
|
| Q |
246 |
tgtcactcttagtctaattatgaagcaaacgaatgtgag |
284 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
48277513 |
tgtcactcttagtcttattatgaagcaaacaaatgtgag |
48277475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University