View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15805_low_10 (Length: 355)
Name: NF15805_low_10
Description: NF15805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15805_low_10 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 44393221 - 44393581
Alignment:
| Q |
1 |
aagattgtatatctccaccagaagaaggacctggagtagttggcattggtgaagaagcttctggtgctgaagcttttgttggagttacctttatggctag |
100 |
Q |
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| T |
44393221 |
aagattgtatatctccaccagaagaaggacctggagtagttggcattggtgaagaagcttctggtgctgaagcttttgttggagttacctttatggctag |
44393320 |
T |
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| Q |
101 |
cttctgagaatcttgacaggctttgagtgagtcattggagaaggtgaagtagaagaaaccaacacgagaagggtgccactgaaaaaatgaaaggaaattg |
200 |
Q |
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| T |
44393321 |
cttctgagaatcttgacaggctttgagtgagtcattggagaaggtgaagtagaagaaaccaacacgagaagggtgccactgaaaaaatgaaaggaaattg |
44393420 |
T |
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| Q |
201 |
gtttaagaaaatttgatagtatatttctgaagaactcaaaatatgaaaaataatgaatttttgagctgtttttaaagaaccattatgcaatttgaagggt |
300 |
Q |
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| T |
44393421 |
gtttaagaaaatttgatagtatatttctgaagaactcaaaatatgaaaaataattaatttttgagctgtttttaaagaaccatgatgcaatttgaagggt |
44393520 |
T |
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| Q |
301 |
cttaccgtat------aggaggtagtgctaggatcagtgagaagattggcttgagtgaaat |
355 |
Q |
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| T |
44393521 |
cttaccgtataggagcaggaggtagtgctaggatcagtgagaagattggcttgagtgaaat |
44393581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 40713352 - 40713267
Alignment:
| Q |
270 |
ttttaaagaaccattatgcaatttgaagggtcttaccgtataggaggtagtgctaggatcagtgagaagattggcttgagtgaaat |
355 |
Q |
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| T |
40713352 |
ttttcaagaacccgtatgaaatttgaagggtcttacagtgtaggaggtagtgttggggttggtgagcatattggcttgcgtgaaat |
40713267 |
T |
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