View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15805_low_11 (Length: 332)
Name: NF15805_low_11
Description: NF15805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15805_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 77 - 313
Target Start/End: Complemental strand, 33948980 - 33948744
Alignment:
| Q |
77 |
gttccaaccaaagatgctaaagttaccgggtaggtgacagattgagcacgaaggtaaatcctaattggttgaagaaaagaattagtaacaagatcaggta |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948980 |
gttccaaccaaagatgctaaagttaccgggtaggtgacagattgagcacgaaggtaaatcctaattggttgaagaaaagaattagtaacaagatcaggta |
33948881 |
T |
|
| Q |
177 |
acaaaaacacaagataagtttgtgacatttgggtgattttatcatcttgatgtaaaaaatgaaagattctagacatattaaaccatagaaaagaaatggg |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948880 |
acaaaaacacaagataagtttgtgacatttgggtgattttatcatcttgatgtaaaaaatgaaagattctagacatattaaaccatagaaaagaaatggg |
33948781 |
T |
|
| Q |
277 |
taaagaacatgataagaggaagattatacaccgttga |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948780 |
taaagaacatgataagaggaagattatacaccgttga |
33948744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 33949047 - 33949009
Alignment:
| Q |
10 |
agaagcaaaggcaataccagaaataccctttttgaagag |
48 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33949047 |
agaagcaatggcaataccagaaataccctttttgaagag |
33949009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University