View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15805_low_15 (Length: 282)
Name: NF15805_low_15
Description: NF15805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15805_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 27730936 - 27731200
Alignment:
| Q |
1 |
tccactatcacgatcactgaaatattctaaatcaccttcactgctaccacccataaaacttccatgcacttcactgccgatatcggcagcatcactgttg |
100 |
Q |
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| T |
27730936 |
tccactatcacgatcacggaaatattctaaatccccttcactgctaccaccaataaaacttccatgcacttcactgccgatatcggcagcatcactgttg |
27731035 |
T |
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| Q |
101 |
aaacccaccccgattgacctaactgaaccgtgttgatcatcttccatttcctcgagtcgtaatcttccactatgattcagaacttttccatctcccaaca |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27731036 |
aaacccaccccaattgacctaactgaaccgtgttgatcatcttccatttcctcgagtcgtgatcttccactatgattcagaacttttccatctcccaaca |
27731135 |
T |
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| Q |
201 |
tgatcaggtcatttgtctgagggacaaagccctgctagacaggttccgcgtgcatcagactcagt |
265 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
27731136 |
tgatcaggtcgtttgtctgagggacaaagccctgccagacaggctccgcgtgcatcagattcagt |
27731200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 27710924 - 27711182
Alignment:
| Q |
1 |
tccactatcacgatcactgaaatattctaaatcaccttcactgctaccacccataaaacttccatgcacttcactgccgatatcggcagcatcactgttg |
100 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27710924 |
tccactatcacgatcacggaaatattctaaatccccttcactgctaccaccaataaaacttccatgcacttcactgccgatatcggcagcatcactgttg |
27711023 |
T |
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| Q |
101 |
aaacccaccccgattgacctaactgaaccgtgttgatcatcttccatttcctcgagtcgtaatcttccactatgattcagaacttttccatctcccaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||| |
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| T |
27711024 |
aaacccaccccgattgacctaactgaaccgtgttgatcatcttccatttgctcgagtcgtgatcttccactatgattcataactattccatctcccaaca |
27711123 |
T |
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| Q |
201 |
tgatcaggtcatttgtctgagggacaaagccctgctagacaggttccgcgtgcatcaga |
259 |
Q |
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|||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||| |
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| T |
27711124 |
tgatcaggtcgtttgtctgagggaaaaatccctgcataacaggttccgcgtgcatcaga |
27711182 |
T |
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