View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15805_low_9 (Length: 366)
Name: NF15805_low_9
Description: NF15805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15805_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 70 - 350
Target Start/End: Original strand, 19345405 - 19345690
Alignment:
| Q |
70 |
cgatagtgatttcttcatcataattcagaaatgtaaatggttggaaagaaatcttactgggaaaaatacgagtccaagaaattgaaaacctataagcatc |
169 |
Q |
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| T |
19345405 |
cgatagtgatttcttcatcataattcagaaatgtaaatggttggaaagaaatcttactgggaaaaatacgagtccaagaaatagaaaacctataagcatc |
19345504 |
T |
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| Q |
170 |
cattcccatgtccttcataagttgtatgtctccctacatgc-nnnnnnntaatcacaattgaaaataccttccagaaattgtttaaatatgaatttcttt |
268 |
Q |
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| T |
19345505 |
cattcccatgtccttcataagttgtatgtctccctacatgcaaaaaaaataatcacaattgaaaataccttccagaaattggttaaatatgaatttcttt |
19345604 |
T |
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| Q |
269 |
tcatgaccatttatcac----tataaaaatagctatatatactaattgtctagttagctacacttagaagaagtgattgaggttaa |
350 |
Q |
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| T |
19345605 |
tcatgaccatttatcactatatataaaaatagctatatatactaattgtctagttagctacacttagaagaagtgattgaggttaa |
19345690 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 32278180 - 32278258
Alignment:
| Q |
122 |
cttactgggaaaaatacgagtccaagaaattgaaaacctataagcatccattcccatgtccttcataagttgtatgtct |
200 |
Q |
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| T |
32278180 |
cttactgggataaattcgagaccaagagatggaaaatctataggcatccatccccaagtccttcatgagttgtatgtct |
32278258 |
T |
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