View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15806_high_1 (Length: 653)
Name: NF15806_high_1
Description: NF15806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15806_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Original strand, 24781059 - 24781691
Alignment:
| Q |
1 |
ccattgttgtattttaattatctcataaatacaatgttgaaaatgataacagatgatacacacagtattaattagatatcataatccaagnnnnnnntca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
24781059 |
ccattgttgtattttaattatctcataaatacaatgttgaaaatgataacagatgatacacacagtattaattagatatcataatccaagaaaaaaataa |
24781158 |
T |
|
| Q |
101 |
attaaaactaaattagaaattgaaattgacactttttgaaacaactcttgtgtgtaaatgtgacaattattagagaaagctggattaaccaatgagacac |
200 |
Q |
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| T |
24781159 |
attaaaactaaattagaaattgaaattgacactttttgaaacaactc--gtgtgtaaatgtgacaattattagagaaagctggattaaccaatgagacac |
24781256 |
T |
|
| Q |
201 |
attgatggcaaacattacttctttttgcaagcttcaagtggctttccacaaaggcaatcattgacctcaaacgaagatgcatcaagatgatccaaaactt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24781257 |
attgatggcaaacattacttctttttgcaagcttcaagtggctttccacaaagacaatcattgacctcaaacgaagatgcatcaagatgatccaaaactt |
24781356 |
T |
|
| Q |
301 |
taggaattggaccacacaaatgattatggctcaaatccatgtaaccaatgtaagcagcagaagatatagatttaggtataggacccttgagattattata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24781357 |
taggaattggaccacacaaatgattatggctcaaatccatgtaaccaatgtaagcagcagaagatatagatttaggtataggacccttgagattattata |
24781456 |
T |
|
| Q |
401 |
ggaaatatccaatgaagtaaaataagacctacccccaaatgcatcaggtatattaccctccaacaaattatgacttaagttcaaatcacttattcctgaa |
500 |
Q |
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| T |
24781457 |
ggaaatatccaatgatgtaaaataagacctacccccaaatgcatcaggtatattaccctccaacaaattatgacttaagttcaaatcacttattcctgaa |
24781556 |
T |
|
| Q |
501 |
ccaaaaagagactttgggatcatccctgaaagcttgtttgtatcaagctttagggttcccaaaacagacattaagcctaatgattccgggatgggcccgg |
600 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24781557 |
ccaaaaagagactttgggatcatccccgaaagcttgtttgtatcaagctttagggttcccaaaacagacattaagcctaatgattccgggatgggcccgg |
24781656 |
T |
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| Q |
601 |
ataattggtttcgagatagatcaagatccgaaaga |
635 |
Q |
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| T |
24781657 |
ataattggtttcgagatagatcaagatccgaaaga |
24781691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 41997963 - 41998052
Alignment:
| Q |
311 |
accacacaaatgattatggctcaaatccatgtaaccaatgtaagcagcagaagatatagatttaggtataggacccttgagattattata |
400 |
Q |
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||||||||||||||||| |||||||||| | ||||| |||| ||||||| || |||||||||||||||||||| |||| |||||| |
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| T |
41997963 |
accacacaaatgattataactcaaatccaaatgtccaatataagaagcagaacccattgatttaggtataggacccttaagatgattata |
41998052 |
T |
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