View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15806_low_2 (Length: 479)
Name: NF15806_low_2
Description: NF15806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15806_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Original strand, 4980793 - 4981246
Alignment:
| Q |
13 |
caaagggtaaaaaatataaattaatttgaactttaa-gaaagtgctaggtgagagagaagtatacacgtgacacatgcaacaaaagccattaatttgtta |
111 |
Q |
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| T |
4980793 |
caaagggtaaaaaaaataaattaatttgaactttaaagaaagtgctaggtgaga----agtatacacgtgacacatgcaacaaaagccattaatttgtta |
4980888 |
T |
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| Q |
112 |
tgagttaagttctcacattttatcctgaacacgtgtattggacacaatactaacatgcactcatacataccaacaataataatctgagaaaatgtaaa-- |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4980889 |
tgagttaagttctcacattttatcctgaacacgtgtattggacacaatactaacatgcactcatacataccaacaataat---ctgagaaaatgtaaatg |
4980985 |
T |
|
| Q |
210 |
-------gtgccgaagtcatgttaatatcaagcactgtatgcatttattctgaaatgtcatattacattatatttcaccccagacgataatgttttaacc |
302 |
Q |
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| T |
4980986 |
aaactgtgtgccgaagtcatgttaatatcaagcactgtatgcatttattctgaaatgtcatattacattatatttcaccccagacgataatgttttaacc |
4981085 |
T |
|
| Q |
303 |
agtggtttgttgcatgatattcatctttatattatgtcattttgtgtccacatagtattgcctcacaagtcttgttggataccacaataatactgttgtt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4981086 |
agtggtttgttgcatgatattcatctttatattatgtcattttgtgtccacatagtattgcctcacaagtcttgttggataccacaataatactgttgtt |
4981185 |
T |
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| Q |
403 |
ttacagtttctctgtaccccacattttcatacgcaaaggtggtactatagttagtggttag |
463 |
Q |
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| T |
4981186 |
ttacagtttctctgtaccccacattttcatacgcaaaggtggtattatagttactggttag |
4981246 |
T |
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