View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15806_low_3 (Length: 375)
Name: NF15806_low_3
Description: NF15806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15806_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 41 - 359
Target Start/End: Original strand, 34031457 - 34031775
Alignment:
| Q |
41 |
attacaatacattataaatcagcattaattaaatgtccacaatattaaaaccttgcagtactgggaccccagcaattcaagtccatgactttcctcatag |
140 |
Q |
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| T |
34031457 |
attacaatacattataaatcagcattaattaaatgtccacaatattaaaaccttgcagtactaggaccccagcaattcaagtcaatgactttcctcatag |
34031556 |
T |
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| Q |
141 |
attcttccttgcttctcttcaccttattcgaaacagcagcagatgaagcagatgacaatttcttggcttgagagtatgatctaatattgttcttagcatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34031557 |
attcttccttgcttctcttcaccttattcgaaacagcagcagatgaagcagaggacaatttcttggcttgagagtatgatctaatattgttcttagcatg |
34031656 |
T |
|
| Q |
241 |
ttgatgaagtgatctaaaagcatagttccacctgcatacaccaagttgatcttttaatgcttccactgctcctatgcttgatgctactacccaagctttt |
340 |
Q |
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| T |
34031657 |
ttgatgaagtgatctaaaagcatagttccacctgcatacaccaagttggtcttttaatgcttccactgctcctatgcttgatgctactacccaagctttt |
34031756 |
T |
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| Q |
341 |
gttgctgcactcatgttgt |
359 |
Q |
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| T |
34031757 |
gttgctgcactcatgttgt |
34031775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 49 - 354
Target Start/End: Original strand, 34029530 - 34029835
Alignment:
| Q |
49 |
acattataaatcagcattaattaaatgtccacaatattaaaaccttgcagtactgggaccccagcaattcaagtccatgactttcctcatagattcttcc |
148 |
Q |
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|||| |||||| ||||| |||| || |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
34029530 |
acatcataaattagcatcaattcaaagtccacaatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttcc |
34029629 |
T |
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| Q |
149 |
ttgcttctcttcaccttattcgaaacagcagcagatgaagcagatgacaatttcttggcttgagagtatgatctaatattgttcttagcatgttgatgaa |
248 |
Q |
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| T |
34029630 |
ttggttcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaa |
34029729 |
T |
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| Q |
249 |
gtgatctaaaagcatagttccacctgcatacaccaagttgatcttttaatgcttccactgctcctatgcttgatgctactacccaagcttttgttgctgc |
348 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
34029730 |
gtgacctaaaagcatagttccacctgcatacaccaagttggtcttttaaagcttccactgctcctatgcttgatgctactacccatgctcttgttgctgc |
34029829 |
T |
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| Q |
349 |
actcat |
354 |
Q |
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|||||| |
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| T |
34029830 |
actcat |
34029835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 63 - 359
Target Start/End: Original strand, 34026616 - 34026912
Alignment:
| Q |
63 |
cattaattaaatgtccacaatattaaaaccttgcagtactgggaccccagcaattcaagtccatgactttcctcatagattcttccttgcttctcttcac |
162 |
Q |
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||||| ||||| || |||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34026616 |
cattatttaaaagtgcacaatattaaaaccttgaagtactaggaccccgacaattcaagtcaatgactttcctcatagattcttccttgcttctcttcac |
34026715 |
T |
|
| Q |
163 |
cttattcgaaacagcagcagatgaagcagatgacaatttcttggcttgagagtatgatctaatattgttcttagcatgttgatgaagtgatctaaaagca |
262 |
Q |
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| T |
34026716 |
cttgttggaaacagcagcagaagaagcagatgacaatttcttggccttagtgtatgatctgatattgctcttagcatgctgatgaaaggatctaaaagaa |
34026815 |
T |
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| Q |
263 |
tagttccacctgcatacaccaagttgatcttttaatgcttccactgctcctatgcttgatgctactacccaagcttttgttgctgcactcatgttgt |
359 |
Q |
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| T |
34026816 |
tggttccacctgcatacaccaagttggtcttttaaggcctccactcctcctgtgcttaatgctatcatccaagctcttactgctgcactcatgttgt |
34026912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 354
Target Start/End: Original strand, 34034675 - 34034919
Alignment:
| Q |
104 |
ggaccccagcaattcaagtccatgactttcctcatagattcttccttgcttctcttcaccttattcgaaacagcagcagatgaagcagatgacaatttct |
203 |
Q |
| |
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|||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||| |||| || ||| || |||||| | |||||| |||| |
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| T |
34034675 |
ggaccccaacaattcaggtccatgactttcttcatagattcttccttgtttctcttccccttgttggaagcattagcaga------atttgacaaattct |
34034768 |
T |
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| Q |
204 |
tggcttgagagta---tgatctaatattgttcttagcatgttgatgaagtgatctaaaagcatagttccacctgcatacaccaagttgatcttttaatgc |
300 |
Q |
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||||||||| ||| ||||| || | ||| ||||||| || | ||| ||||||||||||||||| || || | || | |||||||||||| || |
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| T |
34034769 |
tggcttgagtgtaaggtgatc------tggtattaacatgttgttgcattgacctaaaagcatagttccatctacaaatccctaattgatcttttaaggc |
34034862 |
T |
|
| Q |
301 |
ttccactgctcctatgcttgatg---ctactacccaagcttttgttgctgcactcat |
354 |
Q |
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||||| ||||| |||||||||| |||||| ||||||||| |||| ||||||||| |
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| T |
34034863 |
ctccacagctccaatgcttgatgcaactactatccaagctttagttgttgcactcat |
34034919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 34031361 - 34031395
Alignment:
| Q |
8 |
cgaagaaaattttggatgaatttgatacataagat |
42 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
34031361 |
cgaacaaaattttggatgaatttgatacataagat |
34031395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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