View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15807_high_1 (Length: 416)
Name: NF15807_high_1
Description: NF15807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15807_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 23845038 - 23845415
Alignment:
| Q |
17 |
cataggggctcaatttggacatcgtaatagttgacaccaatgacaggtacaattttccaattatccttggaagatcgttctttgctcagactagccttat |
116 |
Q |
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| T |
23845038 |
cataggggctcaatttggacatcgtaatagttgacaccaatgacaggtacaattttccaattatccttggcagatcgttctttgctcagactagtcttat |
23845137 |
T |
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| Q |
117 |
tttggatggaggacaggggcgcactatcatcagaacccaaaagaaatatcaggtgttccttgtgactcatcttgagtacatggaagacttaagtcaaaca |
216 |
Q |
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| T |
23845138 |
tttcgatggagaacaggggcgcactatcatcagaacccaaaagaaatattaggtgttccttgtgactcatcttgagtacgtggaagacttaagtcaaaca |
23845237 |
T |
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| Q |
217 |
ccaaaatggattttcctcaagggagctgtggaggaacatgctagaagtggagtcgaagaagaataagcaagaggatatctactagacaaagactctggct |
316 |
Q |
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| T |
23845238 |
ccaaaatggattttcctcaagggagctgtgaaggaacatgctagaagtggagtcgaagaagaataagcaagaggatatctaccagacgaagactctggct |
23845337 |
T |
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| Q |
317 |
tcgaagatcatgatgaagacaaggaccttaaggacatgggctcccaaacacaagttaaacttgtgggtgattgttcgt |
394 |
Q |
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| T |
23845338 |
tcgaagatcatgatgaagacaaggaccttaaggacatgggctcctgaacacaagttacacttgtgggtgattgttcgt |
23845415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 373
Target Start/End: Complemental strand, 28858322 - 28858150
Alignment:
| Q |
201 |
agacttaagtcaaacaccaaaatggattttcctcaagggagctgtggaggaacatgctagaagtggagtcgaagaagaataagcaagaggatatctacta |
300 |
Q |
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| T |
28858322 |
agacttgagtcaaacaccagaattaattcttcttaaaggagttgtggatgcatatgctagaa-tgaagtcgaagaagaagaagcaagaggatatctgcca |
28858224 |
T |
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| Q |
301 |
gacaaagactctggcttcgaagatcatgatgaagacaagga-ccttaaggacatgggctcccaaacacaagtta |
373 |
Q |
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| T |
28858223 |
gatgaagattctgacttcgaagatgatgaggaaggcaaggagcctgaaggttaggggctcccgagcacaagtta |
28858150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 28858407 - 28858353
Alignment:
| Q |
68 |
attttccaattatccttggaagatcgttctttgctcagactagccttattttgga |
122 |
Q |
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| T |
28858407 |
atttcccaattatcctagggagatcgttctttgctcaggctggtcttattttgga |
28858353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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