View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15807_high_2 (Length: 346)
Name: NF15807_high_2
Description: NF15807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15807_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 41823698 - 41824029
Alignment:
| Q |
17 |
aggagaatgaagcacataaaagaaacaccaccacaagagaaaagaaacgagccatgttgtattttcttttctattttagtgatgattgatttcttacaac |
116 |
Q |
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| T |
41823698 |
aggagaatgaagcacataaaagaaacaccaccacaagagaaaagaaacgagccatgttgtattttcttttctattttagtgatgattgatttcttacaac |
41823797 |
T |
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| Q |
117 |
cataccttcacagtttatatagtaaaaagtaacatgcgta-ctaagacctaattcaaatgacaaaaatatgtcaaatatattaagtgacaaaaatgtaac |
215 |
Q |
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| T |
41823798 |
cataccttcacagtttatatagcaaaaagtaacatgcgtacctaattcctaattcaaatgacaaaaatatgtcaaatatattaagtgacaaaaatgtaac |
41823897 |
T |
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| Q |
216 |
aataagaaattacaactaacaagcattatccaaatataaaaag-aaacacaaattaatattgaagcctaaaaaagaaagtaactcgtcaacaaatcctaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
41823898 |
aataagaaattacaactaacaagcattatccaaatataaaaggaaaacacaaattaatattgaagcctaaaaaagaaagttactcgtcaacaaatcttaa |
41823997 |
T |
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| Q |
315 |
ttcaactgacaaaaatgttaaaattgtgatga |
346 |
Q |
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| T |
41823998 |
tttaactgacaaaaatgttaaaattgtgatga |
41824029 |
T |
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