View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15808_high_11 (Length: 252)
Name: NF15808_high_11
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15808_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 10559152 - 10559386
Alignment:
| Q |
17 |
aatggataaagatggtaaaatattctctccaatttattttttgggtacaaactctctccaatcttaaatttaagcaaaactaaaatgtatttgatcataa |
116 |
Q |
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| T |
10559152 |
aatggataaagatggtaaaatactttctccaatttttttttttggtacaaactctctccaatcttaaatttaagcaaaagtaaaatgtatttgatcaaaa |
10559251 |
T |
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| Q |
117 |
ttaaatttggatcaaatacattttgaa-ttttcttataatttggacaaaatatattatgacttttgcttataatttgaacaaaatacatttgtatttttc |
215 |
Q |
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| T |
10559252 |
ttaaatctggatcaaatacattttgaatttttcttataatttggacaaaatatattatgacttttgcttataatttgaacaaaatacatttgtatttttt |
10559351 |
T |
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| Q |
216 |
tttatatttgttaagcaaatgaggagcagatggtc |
250 |
Q |
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| T |
10559352 |
tttatatttgttaagcaaatgaggagcagatggtc |
10559386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 45776127 - 45776095
Alignment:
| Q |
118 |
taaatttggatcaaatacattttgaattttctt |
150 |
Q |
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| T |
45776127 |
taaatttggatcaaatacattttgacttttctt |
45776095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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