View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15808_high_15 (Length: 218)
Name: NF15808_high_15
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15808_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 22552060 - 22552247
Alignment:
| Q |
14 |
cataggcatcaattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaagaattt |
113 |
Q |
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| T |
22552060 |
cataggcatcaattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaagaattt |
22552159 |
T |
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| Q |
114 |
ggaaattaatcatgtacatacccatattgtattcaactaatttgtgttttaatttcaggctgcaatatacattggtgtgtgcattatg |
201 |
Q |
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| T |
22552160 |
ggaaattaatcatgtacatacccatattatattcaactaatctgtgttttaatttcaggctgccatatacattggtgtgtgcattatg |
22552247 |
T |
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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 41890506 - 41890423
Alignment:
| Q |
24 |
aattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaa |
107 |
Q |
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| T |
41890506 |
aattgtttcagcttcctagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattgggtaa |
41890423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 41896108 - 41896025
Alignment:
| Q |
24 |
aattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaa |
107 |
Q |
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| T |
41896108 |
aattatttcagcttcctagtataatgtggttgataatcaagaagccaaggagattcagtatcaattggttcatcaattgggtaa |
41896025 |
T |
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