View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15808_high_16 (Length: 203)
Name: NF15808_high_16
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15808_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 47197653 - 47197824
Alignment:
| Q |
15 |
cataggaattttcatagcaaacctcgtcaactggtttacatcaaagtaagttaaatttgattattaatattcgtaataacatttttaactaagtaaatat |
114 |
Q |
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| T |
47197653 |
cataggaattttcatagcaaaccttgtcaactggtttacatcaaagtaagttaaatttgattaataatattcgtaataacatttttaactaagtaaatat |
47197752 |
T |
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| Q |
115 |
tttgaactataatgtaataactgtttatattggaaaacagaatcaaaggtggatatgggtggagattatcat |
186 |
Q |
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| T |
47197753 |
tttgaactataatgtaataactgtttatattggaaaacagaatcaaaggtggatatgggtggagagtatcat |
47197824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 47184774 - 47184942
Alignment:
| Q |
15 |
cataggaattttcatagcaaacctcgtcaactggtttacatcaaagtaagttaaatttgattattaatattcgtaataacatttttaactaagtaaatat |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||||| ||| | || | |
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| T |
47184774 |
cataggaattttcatagcaaaccttgtcaactggtttacatcaaagtaagttaaatttgattaataatcttcataataaca-ttttaattaattgaaaac |
47184872 |
T |
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| Q |
115 |
tttgaactataatgtaataactgtttatattggaaaacagaatcaaaggtggatatgggtggagattatcat |
186 |
Q |
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| T |
47184873 |
tttgaa-tagtctataataattgtttata-tgaaaaacagaatggaaggtggatatgggtggagaatatcat |
47184942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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