View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15808_low_12 (Length: 252)
Name: NF15808_low_12
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15808_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 10559152 - 10559386
Alignment:
| Q |
17 |
aatggataaagatggtaaaatattctctccaatttattttttgggtacaaactctctccaatcttaaatttaagcaaaactaaaatgtatttgatcataa |
116 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
10559152 |
aatggataaagatggtaaaatactttctccaatttttttttttggtacaaactctctccaatcttaaatttaagcaaaagtaaaatgtatttgatcaaaa |
10559251 |
T |
|
| Q |
117 |
ttaaatttggatcaaatacattttgaa-ttttcttataatttggacaaaatatattatgacttttgcttataatttgaacaaaatacatttgtatttttc |
215 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10559252 |
ttaaatctggatcaaatacattttgaatttttcttataatttggacaaaatatattatgacttttgcttataatttgaacaaaatacatttgtatttttt |
10559351 |
T |
|
| Q |
216 |
tttatatttgttaagcaaatgaggagcagatggtc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10559352 |
tttatatttgttaagcaaatgaggagcagatggtc |
10559386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 45776127 - 45776095
Alignment:
| Q |
118 |
taaatttggatcaaatacattttgaattttctt |
150 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
45776127 |
taaatttggatcaaatacattttgacttttctt |
45776095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University