View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15808_low_13 (Length: 229)

Name: NF15808_low_13
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15808_low_13
NF15808_low_13
[»] chr1 (25 HSPs)
chr1 (1-205)||(48594184-48594388)
chr1 (1-205)||(48598795-48598999)
chr1 (1-205)||(48589097-48589305)
chr1 (1-91)||(2820957-2821047)
chr1 (1-90)||(12800429-12800518)
chr1 (1-90)||(28371662-28371751)
chr1 (1-88)||(48153118-48153205)
chr1 (1-91)||(50164236-50164326)
chr1 (1-90)||(2821448-2821537)
chr1 (1-90)||(12799989-12800078)
chr1 (3-91)||(33631051-33631139)
chr1 (3-90)||(43756308-43756395)
chr1 (1-90)||(50164668-50164757)
chr1 (3-90)||(43755849-43755936)
chr1 (3-93)||(38469246-38469336)
chr1 (1-91)||(28371198-28371288)
chr1 (27-92)||(17151864-17151929)
chr1 (24-92)||(33630475-33630543)
chr1 (1-91)||(38328845-38328935)
chr1 (3-92)||(38468904-38468993)
chr1 (3-62)||(38328415-38328474)
chr1 (30-91)||(17151001-17151062)
chr1 (28-63)||(32537672-32537707)
chr1 (28-90)||(32538488-32538550)
chr1 (35-64)||(45065378-45065407)
[»] chr6 (17 HSPs)
chr6 (1-93)||(28983251-28983343)
chr6 (1-92)||(34717714-34717805)
chr6 (1-91)||(34717241-34717331)
chr6 (1-90)||(19062782-19062871)
chr6 (3-92)||(7635596-7635685)
chr6 (1-84)||(28535422-28535506)
chr6 (22-91)||(2924952-2925021)
chr6 (3-91)||(7635123-7635211)
chr6 (1-90)||(28982782-28982870)
chr6 (3-90)||(18290456-18290543)
chr6 (3-91)||(18290214-18290302)
chr6 (3-91)||(4348846-4348934)
chr6 (3-63)||(12999438-12999498)
chr6 (27-64)||(10608304-10608341)
chr6 (45-89)||(14496445-14496489)
chr6 (27-64)||(930950-930988)
chr6 (28-84)||(18605845-18605901)
[»] chr7 (23 HSPs)
chr7 (1-91)||(20559745-20559835)
chr7 (1-91)||(20560240-20560330)
chr7 (1-90)||(33139774-33139863)
chr7 (1-90)||(33140253-33140342)
chr7 (3-90)||(4179637-4179724)
chr7 (8-91)||(42901102-42901185)
chr7 (3-91)||(4180299-4180387)
chr7 (1-90)||(42900647-42900736)
chr7 (3-92)||(30414179-30414268)
chr7 (1-90)||(40641129-40641218)
chr7 (3-92)||(25137410-25137499)
chr7 (1-90)||(40640653-40640739)
chr7 (3-90)||(25137885-25137973)
chr7 (1-52)||(35211940-35211991)
chr7 (29-90)||(33686926-33686987)
chr7 (27-64)||(29006374-29006411)
chr7 (27-64)||(29007183-29007220)
chr7 (28-65)||(41224828-41224865)
chr7 (28-91)||(33687735-33687798)
chr7 (20-93)||(42607078-42607151)
chr7 (30-63)||(35613231-35613264)
chr7 (27-64)||(44896073-44896110)
chr7 (28-64)||(29314608-29314644)
[»] chr3 (30 HSPs)
chr3 (1-90)||(930392-930481)
chr3 (1-91)||(11442114-11442204)
chr3 (2-90)||(32473761-32473849)
chr3 (1-91)||(929910-930000)
chr3 (1-90)||(21166115-21166204)
chr3 (3-91)||(32474423-32474511)
chr3 (1-89)||(42257215-42257303)
chr3 (1-84)||(38000251-38000334)
chr3 (18-92)||(43521075-43521149)
chr3 (1-89)||(50766631-50766718)
chr3 (1-92)||(14788559-14788650)
chr3 (3-91)||(5113197-5113285)
chr3 (1-93)||(26006737-26006829)
chr3 (3-90)||(20586545-20586632)
chr3 (3-90)||(24394695-24394782)
chr3 (3-93)||(5113669-5113759)
chr3 (1-75)||(11441664-11441738)
chr3 (3-92)||(36992134-36992223)
chr3 (3-92)||(37017574-37017663)
chr3 (3-90)||(20586072-20586159)
chr3 (3-63)||(45000788-45000848)
chr3 (1-92)||(14788272-14788363)
chr3 (3-90)||(24394247-24394334)
chr3 (3-90)||(26006146-26006233)
chr3 (3-89)||(45000316-45000402)
chr3 (41-92)||(50836214-50836265)
chr3 (41-92)||(50839588-50839639)
chr3 (7-91)||(43104742-43104826)
chr3 (7-64)||(42258026-42258083)
chr3 (49-86)||(24181950-24181987)
[»] chr8 (14 HSPs)
chr8 (1-93)||(14197656-14197748)
chr8 (1-90)||(37657847-37657936)
chr8 (1-90)||(41714603-41714692)
chr8 (3-90)||(30846016-30846103)
chr8 (31-90)||(31408164-31408223)
chr8 (1-88)||(39439760-39439847)
chr8 (2-88)||(39440559-39440644)
chr8 (3-91)||(30846457-30846545)
chr8 (1-47)||(41715226-41715272)
chr8 (24-68)||(42573602-42573646)
chr8 (27-64)||(35759223-35759260)
chr8 (27-64)||(41348171-41348208)
chr8 (3-47)||(37658505-37658549)
chr8 (28-64)||(41092199-41092235)
[»] chr4 (21 HSPs)
chr4 (3-90)||(19860330-19860417)
chr4 (4-91)||(19860834-19860921)
chr4 (1-91)||(5235373-5235463)
chr4 (1-91)||(20174969-20175059)
chr4 (3-91)||(6934463-6934551)
chr4 (4-91)||(52532392-52532479)
chr4 (2-88)||(52532125-52532211)
chr4 (3-91)||(6933820-6933908)
chr4 (1-91)||(5259287-5259377)
chr4 (3-91)||(5235847-5235935)
chr4 (13-93)||(30213886-30213966)
chr4 (24-64)||(46764279-46764319)
chr4 (27-64)||(11680303-11680340)
chr4 (27-64)||(11688582-11688619)
chr4 (27-64)||(25655623-25655660)
chr4 (24-64)||(31910581-31910621)
chr4 (27-69)||(12590187-12590229)
chr4 (28-90)||(3167463-3167525)
chr4 (28-84)||(39412771-39412827)
chr4 (20-64)||(3847913-3847957)
chr4 (28-91)||(39413607-39413670)
[»] chr5 (16 HSPs)
chr5 (1-90)||(5620828-5620917)
chr5 (3-92)||(12330623-12330712)
chr5 (3-91)||(3595776-3595864)
chr5 (3-91)||(7858326-7858414)
chr5 (3-90)||(8321348-8321435)
chr5 (1-93)||(42655699-42655791)
chr5 (3-90)||(12330148-12330235)
chr5 (3-71)||(16996990-16997058)
chr5 (3-90)||(29759597-29759684)
chr5 (3-89)||(3596254-3596340)
chr5 (3-90)||(8320875-8320962)
chr5 (3-90)||(24027187-24027274)
chr5 (3-63)||(24027647-24027707)
chr5 (3-92)||(7858780-7858869)
chr5 (26-91)||(31078455-31078520)
chr5 (33-91)||(36912245-36912302)
[»] chr2 (18 HSPs)
chr2 (1-90)||(3705337-3705426)
chr2 (1-90)||(16681566-16681655)
chr2 (1-92)||(3705783-3705876)
chr2 (3-90)||(7994534-7994621)
chr2 (3-90)||(30899390-30899477)
chr2 (3-91)||(15562001-15562089)
chr2 (3-91)||(16903858-16903946)
chr2 (3-91)||(16992352-16992441)
chr2 (3-90)||(6610004-6610091)
chr2 (1-91)||(37996542-37996632)
chr2 (3-91)||(15561540-15561628)
chr2 (3-63)||(7994082-7994142)
chr2 (3-90)||(30899862-30899949)
chr2 (3-89)||(6609552-6609638)
chr2 (3-63)||(16903425-16903484)
chr2 (7-64)||(16682231-16682288)
chr2 (27-91)||(34617652-34617716)
chr2 (28-64)||(40992249-40992285)
[»] scaffold0508 (2 HSPs)
scaffold0508 (3-93)||(4130-4220)
scaffold0508 (3-90)||(4585-4672)
[»] scaffold0022 (1 HSPs)
scaffold0022 (4-91)||(61573-61660)
[»] scaffold0006 (1 HSPs)
scaffold0006 (3-63)||(202244-202304)
[»] scaffold0095 (1 HSPs)
scaffold0095 (2-88)||(42892-42977)
[»] scaffold0136 (1 HSPs)
scaffold0136 (19-93)||(22203-22278)
[»] scaffold0155 (1 HSPs)
scaffold0155 (28-64)||(17366-17402)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48594184 - 48594388
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacctatgccaggg 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||||    
T  48594184 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaaagtagctttccaatgctaaacctcacctatgccaggg 48594283  T
Q  101 ggatagtcagttgattcaatatataccattttgatttcttnnnnnnnnnnttgaggttattttacttagattatttgcaatacaaattaatattatcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  48594284 ggatagtcagttgattcaatatataccattttgatttcttacaaaaaaaattgaggtttttttacttagattatttgcaatataaattaatattatcata 48594383  T
Q  201 taatt 205  Q
    |||||    
T  48594384 taatt 48594388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48598795 - 48598999
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacctatgccaggg 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||||    
T  48598795 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaaagtagctttccaatgctaaacctcacctatgccaggg 48598894  T
Q  101 ggatagtcagttgattcaatatataccattttgatttcttnnnnnnnnnnttgaggttattttacttagattatttgcaatacaaattaatattatcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  48598895 ggatagtcagttgattcaatatataccattttgatttcttacaaaaaaaattgaggtttttttacttagattatttgcaatataaattaatattatcata 48598994  T
Q  201 taatt 205  Q
    |||||    
T  48598995 taatt 48598999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48589097 - 48589305
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaat--tagctttcccttgctaaacctcacctatgccag 98  Q
    |||||||||||||||||| |||||| |||| ||| |||||||| ||||||||||| | ||||||   ||| |||||| ||||||||||||| ||||||||    
T  48589097 gataaggatgtgttcttgatttgatctaatcgtcgaaaactaattttcccatggtagaaaaaaaaagtagttttcccatgctaaacctcacatatgccag 48589196  T
Q  99 ggggatagtcagttgattcaatatataccattttgattt-cttnnnnnnnnnnttgagg-ttattttacttagattatttgcaatacaaattaatattat 196  Q
    |||||||||||||||||||||||||||||||||||||||  ||          |||||| || ||||||||||||||||||||||||||| |||||||||    
T  48589197 ggggatagtcagttgattcaatatataccattttgatttattttttttaaaaattgaggtttcttttacttagattatttgcaatacaaactaatattat 48589296  T
Q  197 catataatt 205  Q
    |||||||||    
T  48589297 catataatt 48589305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 2821047 - 2820957
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||    
T  2821047 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgttaaacctcacct 2820957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12800429 - 12800518
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  12800429 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagttttcccatgctaaacctcacc 12800518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 28371662 - 28371751
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  28371662 gataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcacc 28371751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48153118 - 48153205
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctca 88  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||    
T  48153118 gataaggatgtgttcttggtttgatctaatgatcaaaaactaactttcccatattgggaaaaaagtagctttcccatgctaaacctca 48153205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 50164326 - 50164236
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||    
T  50164326 gataaggatgtattcttggtttgatctaatggtcataaactaactttcccatagtgggaaaaaagtagttttcccatgctaaacctcacct 50164236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2821448 - 2821537
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| |||| | | ||||||||||||    
T  2821448 gataaggatgtgttcttggtttgatctaatggtcaaaaattaactttcccatggtgggaaaaaagtagttttctcatactaaacctcacc 2821537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 12800078 - 12799989
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||| | ||||||||||||    
T  12800078 gataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtagctttcccatactaaacctcacc 12799989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 33631051 - 33631139
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||| |||||||    
T  33631051 taaggatgtgttcttcgtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtagttttcccatgctaaatctcacct 33631139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 43756308 - 43756395
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||    
T  43756308 taaggatgtgttcttggtttgatttaatggttaaaaactaactttcccatggt-ggaaaaaattagtctttcccatgctaaacttcacc 43756395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 50164668 - 50164757
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||| ||| |||||| | ||||||||||||    
T  50164668 gataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcctatggtggaaaaaaagtagttttcccatactaaacctcacc 50164757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 43755936 - 43755849
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  43755936 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacc 43755849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 38469246 - 38469336
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacctat 93  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||    
T  38469246 taaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggt-ggaaaaaattagcctttcccatgctaaacttcacctat 38469336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28371288 - 28371198
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||  |||||| |||||||| || ||||||| | |||||||||||||    
T  28371288 gataaagatgtgttcttggtttgatctaatggtcaaaaactaactttttcatggtaggaaaaaagtaactttcccatactaaacctcacct 28371198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 17151864 - 17151929
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcaccta 92  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  17151864 taatggtcaaaaactaactttcccatggtggaaaaaaagtagctttcccatgctaaacctcaccta 17151929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 33630543 - 33630475
Alignment:
Q  24 atttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcaccta 92  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||    
T  33630543 atttaatggtcaaaaactaactttcccatggtggaaaataagtagctttcccatgctaaacctcaccta 33630475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 38328845 - 38328935
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||||||||||| |||| ||||||||| ||||||| |||||||| ||||||    
T  38328845 gataaggatgtgttcttggtttgatctaatgattaaaaactaactttcccatgatggg-aaaaattagtctttcccatgctaaacttcacct 38328935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 38468993 - 38468904
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcaccta 92  Q
    |||||||||||||||| ||| || ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||    
T  38468993 taaggatgtgttcttgatttaatataatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcaccta 38468904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 38328474 - 38328415
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaa 62  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||||| ||||| | ||||||    
T  38328474 taaggatttgttcttggtttgatctaatggttaaaaactaacttttccatgataggaaaa 38328415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 17151062 - 17151001
Alignment:
Q  30 tggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||||||||| |||||||||||||||||||||||     ||||||| |||||||||||||||    
T  17151062 tggtcaaaaaataactttcccatggtgggaaaaaccagcctttcccatgctaaacctcacct 17151001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 32537707 - 32537672
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaa 63  Q
    |||||| |||||||||||||||||||||||||||||    
T  32537707 aatggttaaaaactaactttcccatggtgggaaaaa 32537672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 32538488 - 32538550
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    |||||| ||||||||||||| |||||||||| ||||||||| ||||||| |||||||| |||||    
T  32538488 aatggttaaaaactaacttttccatggtggg-aaaaattagcctttcccatgctaaacttcacc 32538550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 45065378 - 45065407
Alignment:
Q  35 aaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||||||||||||||||||||||||||    
T  45065378 aaaaactaactttcccatggtgggaaaaaa 45065407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28983251 - 28983343
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacctat 93  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  28983251 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcacctat 28983343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 34717714 - 34717805
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcaccta 92  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  34717714 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcaccta 34717805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 34717331 - 34717241
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  34717331 gataaggacgtgttcttgatttgatctaatgatcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcacct 34717241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 19062782 - 19062871
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||||    
T  19062782 gataaggatgtgtttttggtttgatctaatggtcaaaaactaactttctcatggtgggaaaaaagtagctttcccatgctaaagctcacc 19062871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 7635596 - 7635685
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcaccta 92  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||    
T  7635596 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgctaaacttcaccta 7635685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28535422 - 28535506
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgg-gaaaaaattagctttcccttgctaaac 84  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||| |||||||||| ||||||||    
T  28535422 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcctatggtggaaaaaaaagtagctttcccatgctaaac 28535506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 2924952 - 2925021
Alignment:
Q  22 tgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||    
T  2924952 tgatctaatggtcaaaaactaactttcctatggtgggaaaaaagtagctttcccatgctaaacctcacct 2925021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 7635211 - 7635123
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||    
T  7635211 taaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacct 7635123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28982870 - 28982782
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||| |  ||||||| ||| |||||| ||||||||||||||    
T  28982870 gataaggatgtgttcttggtttgatcgaatggtcaaaaactaactttcccatgat-agaaaaaagtagttttcccatgctaaacctcacc 28982782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 18290456 - 18290543
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||    
T  18290456 taaggatttgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaacttcacc 18290543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 18290302 - 18290214
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagc-tttcccttgctaaacctcacct 91  Q
    ||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||| |||||| |||||||| ||||||    
T  18290302 taaggatttgttcttggtttgatctaatggttaaaaattaactttcccatggtggga-aaaattagcttttcccatgctaaacttcacct 18290214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 4348934 - 4348846
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||| ||||||| |||||| |||||||  ||||||| ||||| | | ||||| | |||||||| ||||||    
T  4348934 taaggatgtgttcttggtttgatctaatggttaaaaacaaactttcttatggtggaaaaaattaatctttctcatgctaaacttcacct 4348846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 12999438 - 12999498
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaa 63  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||| | ||||||||||||||    
T  12999438 taaggatatgttcttggtttgatctaatggttaaaaactaacttgctcatggtgggaaaaa 12999498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 10608304 - 10608341
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10608304 taatggtcaaaaactaactttcccatggtgggaaaaaa 10608341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 14496489 - 14496445
Alignment:
Q  45 tttcccatggtgggaaaaaattagctttcccttgctaaacctcac 89  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||    
T  14496489 tttcccatggtgagaaaaaagtagctttcccatgctaaacctcac 14496445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 930988 - 930950
Alignment:
Q  27 taatggtcaaaaactaac-tttcccatggtgggaaaaaa 64  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  930988 taatggtcaaaaactaacttttcccatggtgggaaaaaa 930950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 18605845 - 18605901
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaac 84  Q
    |||||| |||||| |||||||||||||| |||||||||||| ||||||| ||||||||    
T  18605845 aatggttaaaaacaaactttcccatggt-ggaaaaaattagcctttcccatgctaaac 18605901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 20559835 - 20559745
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  20559835 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaaaatagctttcccatgctaaacctcacct 20559745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 20560240 - 20560330
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  20560240 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatatagctttcccatgctaaacctcacct 20560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33139863 - 33139774
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||| |||||||||| ||||||||||||||    
T  33139863 gataaggatgtgttcttggtttgatctaatggtcaaaaaccaactttctcatggtggaaaaaaagtagctttcccatgctaaacctcacc 33139774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 33140253 - 33140342
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||    
T  33140253 gataaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtaactttcccatactaaacctcacc 33140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 4179724 - 4179637
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||| | ||||||||||||||    
T  4179724 taaggatgtgttcttggtttgatctaatggtcaaatactaactttcccatggtgggaaaaaaatagttttctcatgctaaacctcacc 4179637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 42901102 - 42901185
Alignment:
Q  8 atgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||    
T  42901102 atgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatagctttttcatgctaaacctcacct 42901185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 4180299 - 4180387
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  ||||||| || || ||||||||||||    
T  4180299 taaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatgtagcttttccatgttaaacctcacct 4180387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 42900736 - 42900647
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  |||||| || |||| || ||||||||||||||    
T  42900736 gataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatggtgaaaaaaaagtaccttttccatgctaaacctcacc 42900647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 30414268 - 30414179
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcaccta 92  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| | |||||| |||||||    
T  30414268 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatactaaacttcaccta 30414179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40641129 - 40641218
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||   |||||| || ||||||| ||||||||||||||    
T  40641129 gataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatagtaaaaaaaaagtaactttcccatgctaaacctcacc 40641218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 25137499 - 25137410
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcaccta 92  Q
    |||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||    
T  25137499 taaggatgtgttattgatttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcaccta 25137410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 40640739 - 40640653
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||||||||   ||||||||||| ||  |||||| ||||||||||||||    
T  40640739 gataatgatgtgttcttggtttgatttaatgattaaaaactaactttccc---gtgggaaaaaagtaattttcccatgctaaacctcacc 40640653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 25137885 - 25137973
Alignment:
Q  3 taaggatgtgttcttgg-tttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||| | |||||| ||||||| ||||||||| |||||||||||||| ||||||||| ||||||| |||||||| |||||    
T  25137885 taaggatgtgttctttgatttgatctaatggttaaaaactaattttcccatggtggg-aaaaattagtctttcccatgctaaacttcacc 25137973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35211991 - 35211940
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccat 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  35211991 gataagaatgtgttcttgatttgatttaatggtcaaaaactaacttttccat 35211940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 33686987 - 33686926
Alignment:
Q  29 atggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||| ||||||||||||||||||||||||||||| | | ||||||| |||||||| |||||    
T  33686987 atggttaaaaactaactttcccatggtgggaaaaattaacctttcccatgctaaacttcacc 33686926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 29006411 - 29006374
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29006411 taatggttaaaaactaactttcccatggtgggaaaaaa 29006374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 29007183 - 29007220
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29007183 taatggttaaaaactaactttcccatggtgggaaaaaa 29007220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 41224828 - 41224865
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaat 65  Q
    |||||| |||||||||||||||||||||||||||||||    
T  41224828 aatggttaaaaactaactttcccatggtgggaaaaaat 41224865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 33687735 - 33687798
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    |||||| |||||||||||||| |||||| |||||||||||| ||||||| |||||||| ||||||    
T  33687735 aatggttaaaaactaactttctcatggt-ggaaaaaattagcctttcccatgctaaacttcacct 33687798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 42607151 - 42607078
Alignment:
Q  20 tttgatttaatggtcaaaaactaactttcccatggtgggaaaaaatt-agctttcccttgctaaacctcacctat 93  Q
    |||||| |||||| ||||||| |||||||||||||||||||| ||||   ||||||| ||||||||| |||||||    
T  42607151 tttgatctaatggacaaaaac-aactttcccatggtgggaaacaattcccctttcccatgctaaaccccacctat 42607078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 35613231 - 35613264
Alignment:
Q  30 tggtcaaaaactaactttcccatggtgggaaaaa 63  Q
    |||||||||||||||||| |||||||||||||||    
T  35613231 tggtcaaaaactaacttttccatggtgggaaaaa 35613264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 44896110 - 44896073
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  44896110 taatggttaaaaactaactttcccatggtggggaaaaa 44896073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 29314644 - 29314608
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  29314644 aatggttaaaaactaactttcccatggtggaaaaaaa 29314608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 930392 - 930481
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  930392 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcacc 930481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11442114 - 11442204
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  11442114 gataaggatgtgttctttgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcacct 11442204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 32473849 - 32473761
Alignment:
Q  2 ataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  32473849 ataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatagtgggaaaaaagtagctttcccatgctaaacctcacc 32473761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 930000 - 929910
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||    
T  930000 gataaggatgtgttattggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagatttcccatgctaaacctcacct 929910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 21166115 - 21166204
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||||||    
T  21166115 gataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccatgctaaacctcacc 21166204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 32474423 - 32474511
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  32474423 taaggatgcgttcttcgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcacct 32474511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42257303 - 42257215
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcac 89  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||    
T  42257303 gataaagatgtgttcttggtttgatttaatggtcaaaaactaacttttccatggtgggaaaaaagtagttttcccatgctaaacctcac 42257215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 38000251 - 38000334
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaac 84  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||    
T  38000251 gataaggatgtgttcttggtttgatctaatggtcaaaaactaacttttccatggtgggaaaaaagcagctttcccatgctaaac 38000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 43521149 - 43521075
Alignment:
Q  18 ggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcaccta 92  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  43521149 ggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcaccta 43521075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 50766718 - 50766631
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcac 89  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  50766718 gataagaatgtgttcttggtttgatctaatggtcaaaaattaacttt-ccatggtgggaaaaaagtagctttcccatgctaaacctcac 50766631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 14788559 - 14788650
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcaccta 92  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||| || |||||||||||||    
T  14788559 gataagaatgtcttcttggtttgatctaatggtcaaaaactaactttcccatgataggaaaaaagtagctttcccatgttaaacctcaccta 14788650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 5113285 - 5113197
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||    
T  5113285 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacct 5113197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26006737 - 26006829
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacctat 93  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||| ||||||| |||||||| ||||||||    
T  26006737 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttctcatgatggg-aaaaattagcctttcccatgctaaacttcacctat 26006829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 20586545 - 20586632
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||    
T  20586545 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaacttcacc 20586632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 24394695 - 24394782
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagc-tttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||| |||||    
T  24394695 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcatttcccatgctaaacttcacc 24394782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 5113669 - 5113759
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacctat 93  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| | |  |||||||| |||||||| ||||||||    
T  5113669 taaggatgtattcttggtttgatctaatggttaaaaactaactttcccatggtgggaaagattaggctttcccatgctaaacttcacctat 5113759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11441738 - 11441664
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttccc 75  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| || |||||||    
T  11441738 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgaaaaaaaagtaactttccc 11441664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 36992134 - 36992223
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcaccta 92  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| | |||||| |||||||    
T  36992134 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatactaaacttcaccta 36992223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 37017574 - 37017663
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcaccta 92  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| | |||||| |||||||    
T  37017574 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatactaaacttcaccta 37017663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 20586159 - 20586072
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  20586159 taaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacc 20586072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 45000788 - 45000848
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaa 63  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  45000788 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 45000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 14788363 - 14788272
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggg-aaaaaattagctttcccttgctaaacctcaccta 92  Q
    ||||| ||||||||||||||||| | |||||||||||||||||||||  ||||||||| |||||| ||| |||||| ||||||||||||||||    
T  14788363 gataaagatgtgttcttggtttgttctaatggtcaaaaactaacttt-tcatggtgggaaaaaaagtagatttcccatgctaaacctcaccta 14788272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 24394334 - 24394247
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||| ||||||| | |||||| |||||    
T  24394334 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggt-ggaaaaaattagtctttcccatactaaacttcacc 24394247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 26006233 - 26006146
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    |||||||||||| || ||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  26006233 taaggatgtgttattagtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacc 26006146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 45000402 - 45000316
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcac 89  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||| ||||||||| ||||||| |||||||| ||||    
T  45000402 taaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatagtggg-aaaaattagcctttcccatgctaaacttcac 45000316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 50836265 - 50836214
Alignment:
Q  41 taactttcccatggtgggaaaaaattagctttcccttgctaaacctcaccta 92  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  50836265 taactttcccatggtgggaaaaaaatagctttcccatgctaaacctcaccta 50836214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 50839588 - 50839639
Alignment:
Q  41 taactttcccatggtgggaaaaaattagctttcccttgctaaacctcaccta 92  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  50839588 taactttcccatggtgggaaaaaaatagctttcccatgctaaacctcaccta 50839639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 43104742 - 43104826
Alignment:
Q  7 gatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagc-tttcccttgctaaacctcacct 91  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||  |||| |||||||||| |||||| |||||||| ||||||    
T  43104742 gatgtgttcttcgtttgatctaatggttaaaaactaactttcccattatggg-aaaaattagcatttcccatgctaaacttcacct 43104826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 42258026 - 42258083
Alignment:
Q  7 gatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    |||||||| ||| |||||| ||||||||||||||||||||||| ||| ||||||||||    
T  42258026 gatgtgttattgatttgatctaatggtcaaaaactaactttccaatgatgggaaaaaa 42258083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 24181950 - 24181987
Alignment:
Q  49 ccatggtgggaaaaaattagctttcccttgctaaacct 86  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  24181950 ccatggtgggaaaaaagtagctttcccatgctaaacct 24181987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14197748 - 14197656
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacctat 93  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||    
T  14197748 gataaggatgtgttcttgctttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtaactttcccatgctaaacctcacctat 14197656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 37657936 - 37657847
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||    
T  37657936 gataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtagctttcccatgctaaacctcacc 37657847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 41714692 - 41714603
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||  |||| ||  |||||| |||||||||| ||||||||||||||    
T  41714692 gataaggatgtgttcttggtttgatctaatgatcaaaaactaactttttcatgatgaaaaaaaaatagctttcccatgctaaacctcacc 41714603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 30846103 - 30846016
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||| ||||||| |||||||| |||||    
T  30846103 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtggga-aaaattagtctttcccatgctaaacttcacc 30846016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 31408164 - 31408223
Alignment:
Q  31 ggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  31408164 ggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcacc 31408223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 39439847 - 39439760
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctca 88  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| | ||| |||||||||| ||||||| || | ||||||||||    
T  39439847 gataaggatgtgttcttggtttgatctaatagtcaaaaactaacttttctatgatgggaaaaaagtagcttttccatactaaacctca 39439760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 39440559 - 39440644
Alignment:
Q  2 ataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||| ||| |||| | ||||||||||||    
T  39440559 ataaggatgtgttcttggtttgatttaatggtcaaaaactaacttttttatggt-ggaaaaaagtagttttctcatgctaaacctca 39440644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 30846457 - 30846545
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||| ||||||| |||||||| ||||||    
T  30846457 taaggatatgttcttggtttgatctaatggttaaaaactaattttcccatggt-ggaaaaaattagcctttcccatgctaaacttcacct 30846545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41715226 - 41715272
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaacttt 47  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  41715226 gataaggatatgttcttggtttgatctaatggtcaaaaactaacttt 41715272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 42573646 - 42573602
Alignment:
Q  24 atttaatggtcaaaaactaactttcccatggtgggaaaaaattag 68  Q
    |||||||||||||||||||| |||| |||||||||||||||||||    
T  42573646 atttaatggtcaaaaactaattttctcatggtgggaaaaaattag 42573602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 35759223 - 35759260
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  35759223 taatggttaaaaactaactttcccatggtggggaaaaa 35759260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 41348208 - 41348171
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41348208 taatggttaaaaactaactttcccatggtggggaaaaa 41348171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 37658505 - 37658549
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaacttt 47  Q
    |||||| |||||||| ||||||| ||||||| |||||||||||||    
T  37658505 taaggacgtgttcttcgtttgatctaatggtaaaaaactaacttt 37658549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 41092235 - 41092199
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  41092235 aatggttaaaaactaacttttccatggtgggaaaaaa 41092199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 19860417 - 19860330
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  19860417 taagtatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatagctttcccatgctaaacctcacc 19860330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 19860834 - 19860921
Alignment:
Q  4 aaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||||||||||    
T  19860834 aaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccacggtgggaaaaaagtaggtttcccatgctaaacctcacct 19860921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5235463 - 5235373
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||    
T  5235463 gataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacct 5235373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 20175059 - 20174969
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||    
T  20175059 gataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacct 20174969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 6934463 - 6934551
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||    
T  6934463 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggt-ggaaaaaattagtctttcccatgctaaacttcacct 6934551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 52532392 - 52532479
Alignment:
Q  4 aaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||| ||||||| || || ||||||||||||    
T  52532392 aaggatgtgttcttggtttgatctactggtcaaaaactaactttccaacggtgggaaaaaagtagcttttccatgttaaacctcacct 52532479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 52532211 - 52532125
Alignment:
Q  2 ataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctca 88  Q
    |||| |||| |||||||||||||| |  ||||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  52532211 ataaagatgcgttcttggtttgatctgctggtcaaaaacaaactttcccatggtgggaaaaaagtagttttcccatgctaaacctca 52532125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 6933908 - 6933820
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| ||||| | |||||||||||| ||||||| |||||||| ||||||    
T  6933908 taaggatgtgttcttggtttgatctaatggttaaaaactaacttttccatgat-ggaaaaaattagtctttcccatgctaaacttcacct 6933820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 5259287 - 5259377
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    ||||| |||||||||||| |||||| |||||||| |||||||||||||||||| ||  |||||| ||| |||| | |||||||||||||||    
T  5259287 gataaagatgtgttcttgatttgatctaatggtcgaaaactaactttcccatgatgaaaaaaaagtagttttctcatgctaaacctcacct 5259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 5235847 - 5235935
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| || |||||||||  |||||| |||||||| ||||||    
T  5235847 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtagg-aaaaattagtttttcccatgctaaacttcacct 5235935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 30213886 - 30213966
Alignment:
Q  13 ttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacctat 93  Q
    ||||||||||||| |||||||||||||||||||||  |||||| | |||||| ||| |||||| || ||||||||||||||    
T  30213886 ttcttggtttgatctaatggtcaaaaactaactttttcatggtagaaaaaaagtagttttcccatgataaacctcacctat 30213966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 46764319 - 46764279
Alignment:
Q  24 atttaatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46764319 atttaatggtcaaaaactaactttcccatggtgggaaaaaa 46764279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 11680340 - 11680303
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11680340 taatggtcaaaaactaactttcccatggtgggaaaaaa 11680303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 11688619 - 11688582
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11688619 taatggtcaaaaactaactttcccatggtgggaaaaaa 11688582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 25655623 - 25655660
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25655623 taatggtcaaaaactaactttcccatggtgggaaaaaa 25655660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 31910621 - 31910581
Alignment:
Q  24 atttaatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  31910621 atttaatggttaaaaactaactttcccatggtgggaaaaaa 31910581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 12590187 - 12590229
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaattagc 69  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  12590187 taatggtcaaaaactaactttcccatggtggaaaaaaactagc 12590229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 3167463 - 3167525
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||||| |||||  |||||||||||||||||||||| | | ||||||| ||||||||| ||||    
T  3167463 aatggttaaaaaacaactttcccatggtgggaaaaagtaatctttcccatgctaaaccccacc 3167525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 39412827 - 39412771
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaac 84  Q
    |||||| ||||||||||||||||||| |||| ||||||||| ||||||| ||||||||    
T  39412827 aatggttaaaaactaactttcccatgatggg-aaaaattagcctttcccatgctaaac 39412771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 3847957 - 3847913
Alignment:
Q  20 tttgatttaatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    |||||| |||||||||||||   ||||||||||||||||||||||    
T  3847957 tttgatctaatggtcaaaaaaatactttcccatggtgggaaaaaa 3847913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 39413607 - 39413670
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    |||||| ||||||||||||||| |||||||| ||||||||| ||||||| | |||||| ||||||    
T  39413607 aatggttaaaaactaactttcctatggtggg-aaaaattagtctttcccattctaaacttcacct 39413670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 5620828 - 5620917
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||||||    
T  5620828 gataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccatgctaaacctcacc 5620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 12330623 - 12330712
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcaccta 92  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||    
T  12330623 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaacttcaccta 12330712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 3595864 - 3595776
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||    
T  3595864 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacct 3595776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 7858414 - 7858326
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||    
T  7858414 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacct 7858326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 8321348 - 8321435
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||    
T  8321348 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaacttcacc 8321435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42655699 - 42655791
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacctat 93  Q
    |||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||| || |||||||||| |||||||| | ||||||    
T  42655699 gataaggatgtgttattggtttgatctaatggtcaaaaactaatttttccatggtgggaaagaagtagctttcccatgctaaacgtgacctat 42655791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 12330235 - 12330148
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  12330235 taaggatgtgttcttggtttgatctaatggttaaaaattaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacc 12330148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 16996990 - 16997058
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctt 71  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  16996990 taaggatgtgttcttcgtttgatctaatggtcaaaaactaactttcccatggtaggaaaaaagtagctt 16997058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 29759684 - 29759597
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||| || |||||||||||| ||||||| |||||||| |||||    
T  29759684 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatagt-ggaaaaaattagtctttcccatgctaaacttcacc 29759597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 3596254 - 3596340
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcac 89  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||| ||||||| |||||||| ||||    
T  3596254 taaggatgtgttcttggtttgatctaatggttaaaaactaattttcccatggtggg-aaaaattagtctttcccatgctaaacttcac 3596340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 8320962 - 8320875
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    |||||||||||| ||||||| || ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  8320962 taaggatgtgttattggtttaatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacc 8320875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 24027274 - 24027187
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| |||| || ||||||||||||| ||||||||||| |||||||| ||||||| |||||||| |||||    
T  24027274 taaggatgtgttcttggtttgatctaatagttaaaaactaacttttccatggtggga-aaaattagcctttcccatgctaaacttcacc 24027187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 24027647 - 24027707
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaa 63  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  24027647 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaa 24027707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 7858780 - 7858869
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcaccta 92  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||   ||||| | | ||||||| || ||||| |||||||    
T  7858780 taaggatgtattcttggtttgatttaatggttaaaaactaactttcccatggtaaaaaaaattaatctttcccatgttaaacttcaccta 7858869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 31078520 - 31078455
Alignment:
Q  26 ttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||    
T  31078520 ttaatggttaaaaactaactttcccatggt-ggaaaaaattagtctttcccatgctaaacttcacct 31078455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 36912302 - 36912245
Alignment:
Q  33 tcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacct 91  Q
    |||||||| ||||||||||||||||||||||||   ||||||| ||||||||| |||||    
T  36912302 tcaaaaac-aactttcccatggtgggaaaaaatagcctttcccatgctaaaccccacct 36912245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 3705426 - 3705337
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  3705426 gatatggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcctatgctaaacctcacc 3705337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16681655 - 16681566
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||    
T  16681655 gataaggatgtgttcttggtttgatctaatggccaaaaactaactttcccatgatgggaaataactagctttcccatgctaaacctcacc 16681566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 3705783 - 3705876
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgg--gaaaaaattagctttcccttgctaaacctcaccta 92  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||| |||  ||||| ||||||||||||||||    
T  3705783 gataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtggaaaaaaaaagtagtcttcccatgctaaacctcaccta 3705876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 7994534 - 7994621
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||    
T  7994534 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggt-ggaaaaaattagcctttcccatgctaaacttcacc 7994621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 30899477 - 30899390
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  30899477 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacc 30899390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 15562001 - 15562089
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||    
T  15562001 taaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaacttcacct 15562089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 16903858 - 16903946
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||    
T  16903858 taaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaacttcacct 16903946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 16992352 - 16992441
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| | ||||||||| ||||||| |||||||| ||||||    
T  16992352 taaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgaggaaaaattagcctttcccatgctaaacttcacct 16992441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 6610004 - 6610091
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||    
T  6610004 taaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaacttcacc 6610091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 37996542 - 37996632
Alignment:
Q  1 gataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| ||||||||| ||||||| |||||||| ||||||    
T  37996542 gataaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatgatggg-aaaaattagcctttcccatgctaaacttcacct 37996632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 15561628 - 15561540
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||| |||||||| ||||||| |||||||| ||||||    
T  15561628 taaggatgtgttcttagtttgatctaatggttaaaaactaactttccaatggtggga-aaaattagtctttcccatgctaaacttcacct 15561540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 7994142 - 7994082
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaa 63  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  7994142 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaa 7994082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 30899862 - 30899949
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| |||| || |||||||||||||  ||||||||| ||||||||| ||||||| |||||||| |||||    
T  30899862 taaggatgtgttcttggtttgatctaatagttaaaaactaactttttcatggtggg-aaaaattagcctttcccatgctaaacttcacc 30899949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 6609638 - 6609552
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcac 89  Q
    |||||||||||| ||||||| || ||||||| ||||||||||||| ||||||||||| |||||||| ||||||| |||||||| ||||    
T  6609638 taaggatgtgttgttggtttcatctaatggttaaaaactaacttttccatggtggga-aaaattagcctttcccatgctaaacttcac 6609552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 16903484 - 16903425
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaa 63  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||||||    
T  16903484 taaggatgtgttcttg-tttgatctaatggttaaaaactaacttttccatggtgggaaaaa 16903425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 16682231 - 16682288
Alignment:
Q  7 gatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||  |||||||||||    
T  16682231 gatgtgttcttcgtttgatttaatagtcaaaaactaactttgccaatgtgggaaaaaa 16682288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 34617716 - 34617652
Alignment:
Q  27 taatggtcaaaaactaactttcccatggtgggaaaaaatta-gctttcccttgctaaacctcacct 91  Q
    ||||||||||||| ||||||||||||||||||||| |||||  ||||||| ||||||||| |||||    
T  34617716 taatggtcaaaaa-taactttcccatggtgggaaacaattatcctttcccatgctaaaccccacct 34617652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 40992285 - 40992249
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  40992285 aatggttaaaaactaactttcccatggtaggaaaaaa 40992249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 4220 - 4130
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacctat 93  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  4220 taaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggga-aaaattagcctttcccatgctaaacttcacctat 4130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 4585 - 4672
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacc 90  Q
    ||||||||||||||||||||||| |||| || ||||||||||||||||||| | |||||||||||| ||||||| |||||||| |||||    
T  4585 taaggatgtgttcttggtttgatctaattgttaaaaactaactttcccatgat-ggaaaaaattagtctttcccatgctaaacttcacc 4672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 61660 - 61573
Alignment:
Q  4 aaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattag-ctttcccttgctaaacctcacct 91  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||| ||||||    
T  61660 aaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatggg-aaaaattagcctttcccatgctaaacttcacct 61573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 202244 - 202304
Alignment:
Q  3 taaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaa 63  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  202244 taaggatgtgttcttggtttgatttaatggttaaaaactaacttttccatggtgggaaaaa 202304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 42892 - 42977
Alignment:
Q  2 ataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgggaaaaaattagctttcccttgctaaacctca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||| ||| |||| | ||||||||||||    
T  42892 ataaggatgtgttcttggtttgatttaatggtcaaaaactaacttttttatggt-ggaaaaaagtagttttctcatgctaaacctca 42977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 22203 - 22278
Alignment:
Q  19 gtttgatttaatggtcaaaaactaactttcccatggtgg-gaaaaaattagctttcccttgctaaacctcacctat 93  Q
    ||||||| |||||||||||||| || |||||||||||||  |||||| |||||||||| ||||||||  |||||||    
T  22203 gtttgatctaatggtcaaaaacaaattttcccatggtggaaaaaaaagtagctttcccatgctaaacgccacctat 22278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 17402 - 17366
Alignment:
Q  28 aatggtcaaaaactaactttcccatggtgggaaaaaa 64  Q
    |||||| ||||||||||||||||||||||||||||||    
T  17402 aatggttaaaaactaactttcccatggtgggaaaaaa 17366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University